Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00808
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.3  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   7.4  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   7.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 186 GADDAERESREDVRVVALSRAE 121
           G D  E   R D+R++ LSR E
Sbjct: 202 GNDGDESSCRADIRILDLSRNE 223


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 231 GFSGNCVGDDLAY 269
           G+   CVGDD+A+
Sbjct: 36  GYKIECVGDDIAW 48


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 133 VPGGTTRPTYCGTP 92
           + G  T  T+CGTP
Sbjct: 136 ISGDKTTKTFCGTP 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,164
Number of Sequences: 438
Number of extensions: 3263
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)