Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00807
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 28 1.1
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 27 1.9
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo... 27 2.5
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 27 3.3
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 27 3.3
SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces pombe... 27 3.3
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 26 4.4
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 26 5.8
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 26 5.8
SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 7.7
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 7.7
SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M... 25 7.7
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 25 7.7
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +1
Query: 226 PSDFKATLDSVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQ 405
PS F +DS H LA+N QE++ L +I + ++ + + +I ERN
Sbjct: 55 PSQFSFEIDSTYAHTLKLAEN--QEIN---LSIIDCTHEIEQLEIEPVTSNDWEIAERNA 109
Query: 406 NWKEAANVLVGIPLETGQK 462
W E N+LV + T ++
Sbjct: 110 AWLE-ENLLVQYRVATTER 127
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.5 bits (58), Expect = 1.9
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Frame = +1
Query: 4 YFAKVYPAY*EIKMPVNLQSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQEFIRV 183
+ K+Y E + P + SV Q LS++RNS +RN L + S E F
Sbjct: 68 FLTKIYIRESEREPPQSHNSVFQLLSKIRNS----VPNVSAFRNNLS--ILSKELSFFSF 121
Query: 184 IESIHRS--------YC**KCEPSDFKATLDSVSTHLALLADNVSQEV 303
IH YC + + FK T+ + T LA + + + EV
Sbjct: 122 ARHIHNRRLCWAEFIYCIRRGIKAIFKTTVQFLPTRLAKIFEKKASEV 169
>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 413
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 52 NLQSVRQYLSELRNSGG--LHKDQAEKYRNVLMEILKSTEQEFIRVIESIHRSY 207
N+Q Y +L S G L+ D+ EKY + + STEQ + +++S ++ +
Sbjct: 73 NIQKKSLYSLQLGRSRGYALYSDENEKYLWSINTKITSTEQREVLLVKSNNKKF 126
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 483 TGNLPKDSQLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIY 608
TG+L KD ++ +D + AF +A L A + + +++IY
Sbjct: 16 TGDLKKDVEVAQPPEDSISDLAFSPQAEYLAASSWDSKVRIY 57
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 492 LPKDSQLYLEVDDPVQAEAFVNRASLLQAETTN 590
LPK+S L ++ V A+A N + +L ++T+N
Sbjct: 528 LPKESDLSMDSITEVSAQADENSSQILSSKTSN 560
>SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 495 PKDSQLYLEVDDP 533
PKD QLYLE+ DP
Sbjct: 14 PKDEQLYLEIIDP 26
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 26.2 bits (55), Expect = 4.4
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +1
Query: 238 KATLDSVSTHLALLADNVSQEVSHFA---LDVIQPRVISFEEQVASIRQHLADIYERNQN 408
K L+ T L LLA +E+ +++IQ +FE+ V+ Q L I ++N N
Sbjct: 50 KEVLNLFLTRLPLLAQAPEKELEPILAVFINLIQESA-AFEDHVSKFCQALEQIADQNNN 108
Query: 409 WKEAANVLVGIPLETGQKQ 465
A ++ I T K+
Sbjct: 109 LTPAILSVLSILFNTAVKE 127
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = +1
Query: 91 NSGGLHKDQAEKYR---NVLMEILKSTE 165
NSG +H +Q E+Y N+ +++L+ T+
Sbjct: 697 NSGTMHMEQLERYHASANIFIQMLRKTD 724
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 55 LQSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQ 168
+Q R+YL L LH E NVL+E + +Q
Sbjct: 88 MQGGREYLETLVEKYNLHMSGIENLENVLLEQKEQLQQ 125
>SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 119
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/42 (26%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +1
Query: 220 CEPSDFKATLDSVSTH--LALLADNVSQEVSHFALDVIQPRV 339
C +F+A+ +S+S H L +++ +S + +A++VI ++
Sbjct: 62 CRSLEFRASANSLSVHFLLNVISAILSMLIERYAVEVIMSKI 103
>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 25.4 bits (53), Expect = 7.7
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 14/61 (22%)
Frame = +1
Query: 454 GQKQYSVDYKLETYLKIANCT---------LKWTIRCKLRHSSTEP-----HCYRPKQPT 591
G+ ++S+ Y L+ YLK ANC+ L TI C+ R S TE H Y+ K P
Sbjct: 24 GKDEHSL-YILDNYLKNANCSENTYEQALILCLTIMCEQRRSWTEMEEKLLHNYQGKIPD 82
Query: 592 S 594
S
Sbjct: 83 S 83
>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 217 KCEPSDFKATLDSVSTHLALLADNVSQEVSHFALDVIQPRVISFEE 354
+ E +K D++ +L N Q AL I+PRV SF++
Sbjct: 8 RLEEKRYKCRADTIPDMSEVLDPNDPQSFGFEALVEIKPRVFSFQK 53
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 489 NLPKDSQLYLEVDDP 533
NLP D LYL V+DP
Sbjct: 255 NLPIDKTLYLSVEDP 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,375
Number of Sequences: 5004
Number of extensions: 54702
Number of successful extensions: 170
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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