Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00807
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0026 - 5086596-5086755,5087035-5087105,5087407-5087466,508...    78   7e-15
08_01_0319 + 2848751-2848762,2849516-2850449,2850476-2851234,285...    29   3.4  
11_04_0290 - 15824108-15824387,15824457-15824635,15825186-158253...    29   4.5  
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427...    29   4.5  
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82...    29   4.5  
04_03_0714 + 18986706-18987257                                         28   6.0  

>03_02_0026 -
           5086596-5086755,5087035-5087105,5087407-5087466,
           5087625-5087684,5088012-5088054,5088130-5088221,
           5088304-5088372,5088458-5088502,5089209-5089317,
           5089579-5089679,5089769-5089861,5089936-5089996,
           5090084-5090187,5091592-5091972
          Length = 482

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 39/92 (42%), Positives = 56/92 (60%)
 Frame = +1

Query: 247 LDSVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQNWKEAAN 426
           L + +  L  L     +EV+H+AL  IQPRV+SFEEQV  IR+ LA++YE  Q W +AA 
Sbjct: 91  LQTFAQELGRLEPEAQKEVAHYALTQIQPRVVSFEEQVVVIREKLAELYESEQQWSKAAQ 150

Query: 427 VLVGIPLETGQKQYSVDYKLETYLKIANCTLK 522
           +L GI L++G +      KL   ++IA   L+
Sbjct: 151 MLSGIDLDSGIRMLDDTNKLSKCVQIARLYLE 182



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 27/48 (56%), Positives = 34/48 (70%)
 Frame = +3

Query: 504 SQLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYYKVCYARVLDYGR 647
           ++LYLE DD V AEAF+N+AS L   +  E L + YKVCYAR+LD  R
Sbjct: 177 ARLYLEDDDSVNAEAFINKASFLVTNSHQELLNLQYKVCYARILDLKR 224


>08_01_0319 +
           2848751-2848762,2849516-2850449,2850476-2851234,
           2851793-2851850,2851900-2852179
          Length = 680

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 272 HCWLIMFHRRFHTLHLMLYNPELFHLKNRWP 364
           H WL++ H    T   ML   +LFHL    P
Sbjct: 481 HVWLLLAHAGMETFPEMLQRRQLFHLPTEEP 511


>11_04_0290 -
           15824108-15824387,15824457-15824635,15825186-15825327,
           15825646-15825683
          Length = 212

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -3

Query: 207 IASMNAFNDSDKFLFCTF*YLHKNIAILFSLIFMQTTRISQLA*VLANTLQID 49
           +A +  +ND  +  FC+     KN+ ILF+ ++   +RI   A ++ N + +D
Sbjct: 8   VALIEKWNDHSEIGFCS-----KNVEILFNALYQTNSRICAKAALVQNRIVMD 55


>03_06_0609 -
           35042276-35042388,35042476-35042527,35042624-35042725,
           35043546-35043745,35045258-35045336,35045541-35045595,
           35045947-35046122,35046386-35046988,35047077-35047265,
           35048150-35048201,35048289-35048356,35048873-35048911,
           35048912-35048970,35049639-35049782,35050136-35050238,
           35050368-35050467,35050596-35050612
          Length = 716

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 388 IYERNQNWKEAANVLVGIPLETGQKQYSVDY 480
           + +R +N ++AANV +   L+  QK YSVD+
Sbjct: 461 LLKRYENNRKAANVAMAALLDGFQKMYSVDF 491


>02_01_0111 -
           825369-825428,825778-826380,826467-827267,827716-827766
          Length = 504

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 557 QSLIATGRNNQRATADILQSLLCQSFRLWKEFIE 658
           ++ +  G+N+  AT D+  S+   +F  WK F++
Sbjct: 251 EATLVGGKNHSHATQDLYDSIAAGNFPEWKLFVQ 284


>04_03_0714 + 18986706-18987257
          Length = 183

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 49  VNLQSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQEFIR 180
           V++++VRQ  ++       H+  AE+ R +    L+  E+EF R
Sbjct: 90  VDVRAVRQQTADQMRQASAHRAYAERVREMARAELELAEREFAR 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,956,219
Number of Sequences: 37544
Number of extensions: 322812
Number of successful extensions: 965
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)