Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00807
(680 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT004883-1|AAO45239.1| 407|Drosophila melanogaster GH09439p pro... 150 2e-36
AE013599-559|AAF59157.1| 407|Drosophila melanogaster CG8725-PA ... 150 2e-36
AF129082-1|AAD28607.1| 407|Drosophila melanogaster COP9 signalo... 147 1e-35
AY071292-1|AAL48914.1| 513|Drosophila melanogaster RE32485p pro... 29 4.5
AE014296-3452|AAS65079.1| 1067|Drosophila melanogaster CG33287-P... 29 4.5
AE014296-3379|AAN12133.1| 513|Drosophila melanogaster CG5130-PB... 29 4.5
AE014296-3378|AAF51612.1| 513|Drosophila melanogaster CG5130-PA... 29 4.5
AY118636-1|AAM50005.1| 1238|Drosophila melanogaster SD02122p pro... 29 5.9
AJ271845-1|CAB76376.1| 1238|Drosophila melanogaster SMC1 protein... 29 5.9
AF225909-1|AAF43149.1| 1238|Drosophila melanogaster cohesin subu... 29 5.9
AE014297-3454|AAF56231.1| 1238|Drosophila melanogaster CG6057-PA... 29 5.9
>BT004883-1|AAO45239.1| 407|Drosophila melanogaster GH09439p
protein.
Length = 407
Score = 150 bits (363), Expect = 2e-36
Identities = 79/158 (50%), Positives = 104/158 (65%)
Frame = +1
Query: 49 VNLQSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQEFIRVIESIHRSYC**KCEP 228
++ ++R L L N G HKDQA+KYR +L +L +T QE I + +
Sbjct: 7 ISTAALRSQLMGLINFTGTHKDQADKYRQLLKTVLTNTGQELIDGLRLFVEAIVNEHVSL 66
Query: 229 SDFKATLDSVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 408
+ L+ V + L+ L D++S+ +SHF L+ + PRVISFEEQVA IR HLA+IYERNQ
Sbjct: 67 VISRQILNDVGSELSKLPDDLSKMLSHFTLEKVNPRVISFEEQVAGIRFHLANIYERNQQ 126
Query: 409 WKEAANVLVGIPLETGQKQYSVDYKLETYLKIANCTLK 522
W++AA VLVGIPLETGQKQYSV+ KL TYLKIA L+
Sbjct: 127 WRDAATVLVGIPLETGQKQYSVECKLGTYLKIARLYLE 164
Score = 78.6 bits (185), Expect = 7e-15
Identities = 37/54 (68%), Positives = 44/54 (81%)
Frame = +3
Query: 486 GNLPKDSQLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYYKVCYARVLDYGR 647
G K ++LYLE +D VQAE F+NRASLLQAET +E+LQ+ YKVCYARVLDY R
Sbjct: 153 GTYLKIARLYLEDNDSVQAELFINRASLLQAETNSEELQVLYKVCYARVLDYRR 206
>AE013599-559|AAF59157.1| 407|Drosophila melanogaster CG8725-PA
protein.
Length = 407
Score = 150 bits (363), Expect = 2e-36
Identities = 79/158 (50%), Positives = 104/158 (65%)
Frame = +1
Query: 49 VNLQSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQEFIRVIESIHRSYC**KCEP 228
++ ++R L L N G HKDQA+KYR +L +L +T QE I + +
Sbjct: 7 ISTAALRSQLMGLINFTGTHKDQADKYRQLLKTVLTNTGQELIDGLRLFVEAIVNEHVSL 66
Query: 229 SDFKATLDSVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 408
+ L+ V + L+ L D++S+ +SHF L+ + PRVISFEEQVA IR HLA+IYERNQ
Sbjct: 67 VISRQILNDVGSELSKLPDDLSKMLSHFTLEKVNPRVISFEEQVAGIRFHLANIYERNQQ 126
Query: 409 WKEAANVLVGIPLETGQKQYSVDYKLETYLKIANCTLK 522
W++AA VLVGIPLETGQKQYSV+ KL TYLKIA L+
Sbjct: 127 WRDAATVLVGIPLETGQKQYSVECKLGTYLKIARLYLE 164
Score = 78.6 bits (185), Expect = 7e-15
Identities = 37/54 (68%), Positives = 44/54 (81%)
Frame = +3
Query: 486 GNLPKDSQLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYYKVCYARVLDYGR 647
G K ++LYLE +D VQAE F+NRASLLQAET +E+LQ+ YKVCYARVLDY R
Sbjct: 153 GTYLKIARLYLEDNDSVQAELFINRASLLQAETNSEELQVLYKVCYARVLDYRR 206
>AF129082-1|AAD28607.1| 407|Drosophila melanogaster COP9
signalosome subunit 4 CSN4 protein.
Length = 407
Score = 147 bits (357), Expect = 1e-35
Identities = 78/158 (49%), Positives = 103/158 (65%)
Frame = +1
Query: 49 VNLQSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQEFIRVIESIHRSYC**KCEP 228
++ ++R L N G HKDQA+KYR +L +L +T QE I + +
Sbjct: 7 ISTAALRSQQMGLINFTGTHKDQADKYRQLLKTVLTNTGQELIDGLRLFVEAIVNEHVSL 66
Query: 229 SDFKATLDSVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 408
+ L+ V + L+ L D++S+ +SHF L+ + PRVISFEEQVA IR HLA+IYERNQ
Sbjct: 67 VISRQILNDVGSELSKLPDDLSKMLSHFTLEKVNPRVISFEEQVAGIRFHLANIYERNQQ 126
Query: 409 WKEAANVLVGIPLETGQKQYSVDYKLETYLKIANCTLK 522
W++AA VLVGIPLETGQKQYSV+ KL TYLKIA L+
Sbjct: 127 WRDAATVLVGIPLETGQKQYSVECKLGTYLKIARLYLE 164
Score = 78.6 bits (185), Expect = 7e-15
Identities = 37/54 (68%), Positives = 44/54 (81%)
Frame = +3
Query: 486 GNLPKDSQLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYYKVCYARVLDYGR 647
G K ++LYLE +D VQAE F+NRASLLQAET +E+LQ+ YKVCYARVLDY R
Sbjct: 153 GTYLKIARLYLEDNDSVQAELFINRASLLQAETNSEELQVLYKVCYARVLDYRR 206
>AY071292-1|AAL48914.1| 513|Drosophila melanogaster RE32485p
protein.
Length = 513
Score = 29.5 bits (63), Expect = 4.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 263 HT*HCWLIMFHRRFHTLHLMLYNPELF 343
H H W + HR T+H+ NP+L+
Sbjct: 333 HDLHIWQLAAHRYVATIHIQFQNPKLY 359
>AE014296-3452|AAS65079.1| 1067|Drosophila melanogaster CG33287-PA
protein.
Length = 1067
Score = 29.5 bits (63), Expect = 4.5
Identities = 22/80 (27%), Positives = 36/80 (45%)
Frame = +1
Query: 112 DQAEKYRNVLMEILKSTEQEFIRVIESIHRSYC**KCEPSDFKATLDSVSTHLALLADNV 291
D E YR+V +EI ++ R++ + ++Y DFK T V L++L D +
Sbjct: 170 DLLEVYRDVQLEIESLFDRLTYRILR-MQKAYMEVPLMIVDFKETSVKVQVPLSVLCDCI 228
Query: 292 SQEVSHFALDVIQPRVISFE 351
+ H D P S+E
Sbjct: 229 TIRCVHTDFDHHSPHAKSYE 248
>AE014296-3379|AAN12133.1| 513|Drosophila melanogaster CG5130-PB,
isoform B protein.
Length = 513
Score = 29.5 bits (63), Expect = 4.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 263 HT*HCWLIMFHRRFHTLHLMLYNPELF 343
H H W + HR T+H+ NP+L+
Sbjct: 333 HDLHIWQLAAHRYVATIHIQFQNPKLY 359
>AE014296-3378|AAF51612.1| 513|Drosophila melanogaster CG5130-PA,
isoform A protein.
Length = 513
Score = 29.5 bits (63), Expect = 4.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 263 HT*HCWLIMFHRRFHTLHLMLYNPELF 343
H H W + HR T+H+ NP+L+
Sbjct: 333 HDLHIWQLAAHRYVATIHIQFQNPKLY 359
>AY118636-1|AAM50005.1| 1238|Drosophila melanogaster SD02122p
protein.
Length = 1238
Score = 29.1 bits (62), Expect = 5.9
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Frame = +1
Query: 109 KDQAEKYRNVLMEILK-STEQEFIRVIES-IHRSYC**KCEPSDFKATLDSVSTHLALLA 282
K Q E+ + L E++K S +Q + +ES I K D +++ S+S +
Sbjct: 701 KMQKERLQEELKELVKKSRKQSELATVESQIKGLENRLKYSMVDLESSKKSISQY----- 755
Query: 283 DNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 408
DN Q+V LD P+++ E ++ + +H+ +I E N
Sbjct: 756 DNQLQQVQS-QLDEFGPKILEIERRMQNREEHIQEIKENMNN 796
>AJ271845-1|CAB76376.1| 1238|Drosophila melanogaster SMC1 protein
protein.
Length = 1238
Score = 29.1 bits (62), Expect = 5.9
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Frame = +1
Query: 109 KDQAEKYRNVLMEILK-STEQEFIRVIES-IHRSYC**KCEPSDFKATLDSVSTHLALLA 282
K Q E+ + L E++K S +Q + +ES I K D +++ S+S +
Sbjct: 701 KMQKERLQEELKELVKKSRKQSELATVESQIKGLENRLKYSMVDLESSKKSISQY----- 755
Query: 283 DNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 408
DN Q+V LD P+++ E ++ + +H+ +I E N
Sbjct: 756 DNQLQQVQS-QLDEFGPKILEIERRMQNREEHIQEIKENMNN 796
>AF225909-1|AAF43149.1| 1238|Drosophila melanogaster cohesin subunit
protein.
Length = 1238
Score = 29.1 bits (62), Expect = 5.9
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Frame = +1
Query: 109 KDQAEKYRNVLMEILK-STEQEFIRVIES-IHRSYC**KCEPSDFKATLDSVSTHLALLA 282
K Q E+ + L E++K S +Q + +ES I K D +++ S+S +
Sbjct: 701 KMQKERLQEELKELVKKSRKQSELATVESQIKGLENRLKYSMVDLESSKKSISQY----- 755
Query: 283 DNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 408
DN Q+V LD P+++ E ++ + +H+ +I E N
Sbjct: 756 DNQLQQVQS-QLDEFGPKILEIERRMQNREEHIQEIKENMNN 796
>AE014297-3454|AAF56231.1| 1238|Drosophila melanogaster CG6057-PA
protein.
Length = 1238
Score = 29.1 bits (62), Expect = 5.9
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Frame = +1
Query: 109 KDQAEKYRNVLMEILK-STEQEFIRVIES-IHRSYC**KCEPSDFKATLDSVSTHLALLA 282
K Q E+ + L E++K S +Q + +ES I K D +++ S+S +
Sbjct: 701 KMQKERLQEELKELVKKSRKQSELATVESQIKGLENRLKYSMVDLESSKKSISQY----- 755
Query: 283 DNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 408
DN Q+V LD P+++ E ++ + +H+ +I E N
Sbjct: 756 DNQLQQVQS-QLDEFGPKILEIERRMQNREEHIQEIKENMNN 796
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,030,882
Number of Sequences: 53049
Number of extensions: 570815
Number of successful extensions: 1551
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1545
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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