Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00807
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-18|AAF60803.1|  412|Caenorhabditis elegans Cop-9 signal...    43   2e-04
U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical pr...    33   0.25 
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr...    33   0.25 
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr...    33   0.25 
U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AC025726-8|AAT81183.1|  537|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z83105-7|CAB05491.1|  432|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AC024826-18|AAF60803.1|  412|Caenorhabditis elegans Cop-9
           signalosome subunit protein 4 protein.
          Length = 412

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 32/54 (59%)
 Frame = +1

Query: 301 VSHFALDVIQPRVISFEEQVASIRQHLADIYERNQNWKEAANVLVGIPLETGQK 462
           +S   L +I+ R IS+E+QV  +R  LA +YE+    K+AA  L+ I  +T  K
Sbjct: 91  ISEGILAIIKTRTISYEDQVCILRLMLASLYEKEGRIKDAAQALIAINSDTSPK 144


>U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical
           protein R07G3.3c protein.
          Length = 1316

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 34  EIKMPVNLQSV-RQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQ 168
           EI+    LQ V +  + E +N+  L KDQ E   NVL+E+ K  ++
Sbjct: 259 EIRCQTELQRVMKSSMEESKNAADLFKDQLEAQENVLVEVRKVLQE 304


>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical
           protein R07G3.3a protein.
          Length = 1982

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 34  EIKMPVNLQSV-RQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQ 168
           EI+    LQ V +  + E +N+  L KDQ E   NVL+E+ K  ++
Sbjct: 259 EIRCQTELQRVMKSSMEESKNAADLFKDQLEAQENVLVEVRKVLQE 304


>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical
           protein R07G3.3b protein.
          Length = 1987

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 34  EIKMPVNLQSV-RQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQ 168
           EI+    LQ V +  + E +N+  L KDQ E   NVL+E+ K  ++
Sbjct: 259 EIRCQTELQRVMKSSMEESKNAADLFKDQLEAQENVLVEVRKVLQE 304


>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 604 ICSCSLVVSACSNEALLTNASACTGSSTSRYSWLSLGRFPVCNQLNI 464
           +CSCS V S+C   +   N   C  + T   + L   + P+C   N+
Sbjct: 246 VCSCSQVSSSCPGTSQCQNKVCCQQTDTLNLNNLIQHQAPLCPGSNV 292


>U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical
           protein T19D12.6 protein.
          Length = 779

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -1

Query: 374 CLILATCSSNEITLGCITSSAKCETSCETLSASSAKC 264
           CL+    S+N     C      CE  CE LS  + +C
Sbjct: 11  CLVTIAGSTNVFQGSCAAEHVLCEQLCEALSPETYEC 47


>AC025726-8|AAT81183.1|  537|Caenorhabditis elegans Hypothetical
           protein Y71G12B.23b protein.
          Length = 537

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 493 YLKIANCTLKW-TIRCKLRHSSTEPHCYRPKQPTSNCRYI 609
           YL IA     W T+RC L H        RP+Q  S  RY+
Sbjct: 460 YLFIAASYTPWLTLRCLLPHVRRLRFSLRPRQEQSGARYL 499


>Z83105-7|CAB05491.1|  432|Caenorhabditis elegans Hypothetical
           protein F14H3.7 protein.
          Length = 432

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 240 LEITRLTFSLTIASMNAFNDSDKFLFCTF 154
           +E + LTF   +  MN  NDS  F F TF
Sbjct: 273 MEFSFLTFENVLKLMNVLNDSANFKFGTF 301


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/32 (28%), Positives = 23/32 (71%)
 Frame = -1

Query: 365 LATCSSNEITLGCITSSAKCETSCETLSASSA 270
           L+TC++++ ++   + S  C+ SC+++ A++A
Sbjct: 279 LSTCTASQPSVCAPSCSTACQLSCDSIGAATA 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,216,074
Number of Sequences: 27780
Number of extensions: 309176
Number of successful extensions: 963
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)