Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00807
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.0  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   4.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.2  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   6.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.2  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   8.2  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 383  AKCCLILATCSSNEITLGCITSSAKCETSCE 291
            A   L  ATC  N+     IT++  C T  E
Sbjct: 940  APVALTAATCDQNKAVKKHITTTIDCSTQSE 970


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 103 LHKDQAEKYRNVLMEILK 156
           LH DQAE+Y+ +   +++
Sbjct: 251 LHADQAEEYKKIQQILIR 268


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +1

Query: 484 LETYLKIANCTLKWTIRCKLRHSSTEPHCYRPKQPT 591
           ++ Y KI     +  +  +   S  E HCY   +PT
Sbjct: 219 IQVYYKIFCAARRIVLEERRAQSHLEAHCYFDIEPT 254


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 430  LVGIPLETGQKQYSVDYKLETYLKIANCTLKW 525
            L+ +  E    +  +D +L  YL+ A   L W
Sbjct: 1160 LIIVQAENAYPEVELDRELRPYLRTAAAILTW 1191


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 88  RNSGGLHKDQAEKYRNVLMEILKSTEQEFIRVIESIHRS 204
           R+    H ++ E+YR V+ E +  +    +  I + H+S
Sbjct: 23  RHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHKS 61


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 435 WNTIRNWTETIFS*LQTGNLPK 500
           WN +  W E I S +  G L K
Sbjct: 627 WNWVYEWKELIPSHIMAGLLDK 648


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 115 QAEKYRNVLMEILKSTEQEFIRVI 186
           + E+ +NVL +I K  EQ+ + V+
Sbjct: 175 EREEIKNVLTKINKIEEQDTVLVV 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,781
Number of Sequences: 438
Number of extensions: 3457
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)