Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00806
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   112   4e-26
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   112   5e-26
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   3.2  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    25   9.8  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   9.8  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  112 bits (270), Expect = 4e-26
 Identities = 49/82 (59%), Positives = 63/82 (76%)
 Frame = -2

Query: 508 RRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESN 329
           ++A  +L NV E K+ +PFRRFNGGVGR AQ K+FG TQ RWP KS +F   LL+NAE+N
Sbjct: 42  KKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQARWPVKSVKFFYDLLKNAEAN 101

Query: 328 ADNKTLDVDRLVIDHIQVNRAP 263
           A+ K LD+D+L+I H+QVN AP
Sbjct: 102 AEAKGLDMDKLIIKHVQVNAAP 123



 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 21/37 (56%), Positives = 28/37 (75%)
 Frame = -1

Query: 254 RRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPT 144
           RRTYRAHGR+  Y+SSP HIE+ ++E E+AV +   T
Sbjct: 127 RRTYRAHGRVTAYLSSPSHIEIIVAEEEEAVPKANDT 163



 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 22/46 (47%), Positives = 25/46 (54%)
 Frame = -3

Query: 630 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLVVLFV 493
           M RYS  P    K  KARG+ LR HFKN+ E A  I  M L   F+
Sbjct: 1   MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFI 46


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  112 bits (269), Expect = 5e-26
 Identities = 49/82 (59%), Positives = 62/82 (75%)
 Frame = -2

Query: 508 RRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESN 329
           ++A  +L NV E K+ +PFRRFNGGVGR AQ K+FG TQ RWP KS  F   LL+NAE+N
Sbjct: 42  KKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQARWPVKSVNFFYDLLKNAEAN 101

Query: 328 ADNKTLDVDRLVIDHIQVNRAP 263
           A+ K LD+D+L+I H+QVN AP
Sbjct: 102 AEAKGLDMDKLIIKHVQVNAAP 123



 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 21/37 (56%), Positives = 28/37 (75%)
 Frame = -1

Query: 254 RRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPT 144
           RRTYRAHGR+  Y+SSP HIE+ ++E E+AV +   T
Sbjct: 127 RRTYRAHGRVTAYLSSPSHIEIIVAEEEEAVPKANDT 163



 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 22/46 (47%), Positives = 25/46 (54%)
 Frame = -3

Query: 630 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLVVLFV 493
           M RYS  P    K  KARG+ LR HFKN+ E A  I  M L   F+
Sbjct: 1   MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFI 46


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 394 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 477
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 219 LH-VVSLPHRSMSQRTRRCCRQGSPY**CPSEEKAFQEKACASKGEDDE 76
           LH ++ LP RS S  T +C  +       P   K  +E   +SKG+D+E
Sbjct: 182 LHSIIKLPDRS-SSFTLQCINESVR----PQSTKVKEEATTSSKGKDEE 225


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 538 DRNGNQKDAARRAVRYLKNVIEKKE 464
           D    +K +A RAV+ +K ++EKK+
Sbjct: 486 DSQERKKVSAIRAVKLMKEIVEKKQ 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,868
Number of Sequences: 5004
Number of extensions: 49959
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)