Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00806
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 104 7e-23
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 103 1e-22
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 33 0.15
06_01_0038 + 375893-376093,376758-376883,376978-377177,377411-37... 29 2.5
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 29 3.3
10_01_0111 + 1384737-1386215 29 4.4
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 28 7.7
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 104 bits (249), Expect = 7e-23
Identities = 51/81 (62%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
Frame = -2
Query: 505 RAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESN 329
+A RYL++VI K+ IPFRR+ GGVGR AQAK + QGRWP KSA F+L LL+NAESN
Sbjct: 43 KAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESN 102
Query: 328 ADNKTLDVDRLVIDHIQVNRA 266
A+ K LDVD L + HIQVN+A
Sbjct: 103 AEVKGLDVDTLYVSHIQVNQA 123
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/41 (70%), Positives = 33/41 (80%)
Frame = -3
Query: 630 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPL 508
M +YSRE +NP KS KA G +LRVHFKNT ETA AIRK+PL
Sbjct: 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPL 41
Score = 62.9 bits (146), Expect = 2e-10
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = -1
Query: 254 RRTYRAHGRINPYMSSPCHIEVCLSEREDAVAR 156
RRTYRAHGRINPYMSSPCHIE+ LSE+E+ V +
Sbjct: 128 RRTYRAHGRINPYMSSPCHIELILSEKEEPVKK 160
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 103 bits (248), Expect = 1e-22
Identities = 51/81 (62%), Positives = 61/81 (75%), Gaps = 1/81 (1%)
Frame = -2
Query: 505 RAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTT-QGRWPKKSAEFLLQLLRNAESN 329
+A RYL++VI K+ IPFRR+ GGVGR AQ K + QGRWP KSA F+L LL+NAESN
Sbjct: 55 KAKRYLEDVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAKSARFILDLLKNAESN 114
Query: 328 ADNKTLDVDRLVIDHIQVNRA 266
AD K LDVD L + HIQVN+A
Sbjct: 115 ADVKGLDVDNLFVSHIQVNQA 135
Score = 67.7 bits (158), Expect = 8e-12
Identities = 29/41 (70%), Positives = 34/41 (82%)
Frame = -1
Query: 254 RRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAP 132
RRTYRAHGRINPYMSSPCH+E+ LSE+E+AV + T AP
Sbjct: 140 RRTYRAHGRINPYMSSPCHVELILSEKEEAVKKEPETTIAP 180
Score = 54.8 bits (126), Expect = 6e-08
Identities = 30/54 (55%), Positives = 34/54 (62%), Gaps = 12/54 (22%)
Frame = -3
Query: 630 MGRYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKMPLV 505
MG+YS EP NP KS KA G +LRVHFK NT ETA A+RK+PLV
Sbjct: 1 MGKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLV 54
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = -2
Query: 451 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQ 278
R +G V RC R K EF Q+ + +E S + + L + + I H+
Sbjct: 1011 RNLSGRVRRCRMHDIIRLLALR--KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLS 1068
Query: 277 VNRAPCLRDVH 245
+ APCLR +H
Sbjct: 1069 GSSAPCLRSLH 1079
>06_01_0038 +
375893-376093,376758-376883,376978-377177,377411-377502,
377966-378222,378610-378846,378986-379063,380422-380571,
380646-380720,381109-381205,381289-381341
Length = 521
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = -2
Query: 469 KECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNA---ESNADNKTLDVDR 299
K+C+ F + G G A Q + + R + S + L + A S D+ TL +R
Sbjct: 216 KQCVWFMQ---GKGIPATEDQVLSLRARHNQTSISYQLNINDEACDRSSKGDHLTLLPER 272
Query: 298 LVIDHIQVNRAPCLRDVHTVLTVASTPTCRLPATSKYVS 182
+ + + R+ + + LTV S+PTC + S +++
Sbjct: 273 IALYGDKDWRSALINTIKNALTVKSSPTCVVADDSMFLA 311
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = -2
Query: 490 LKNVIEKKECIPFRRFNGGVGRCAQAKQ--FGTTQGRWPKKSAEFLLQLLRNAESNAD-- 323
L N++E E R GR A+ Q + RWP ++AE RN E NA+
Sbjct: 400 LDNMVEMHETQVDNRLQDEAGRDARFWQPSLDDSLDRWPNETAE---DAERNWEDNAEEL 456
Query: 322 -NKTLDVDRLVIDHIQ 278
++T++ D DH+Q
Sbjct: 457 HSETMEDDAREHDHLQ 472
>10_01_0111 + 1384737-1386215
Length = 492
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/63 (31%), Positives = 25/63 (39%)
Frame = +3
Query: 180 AETYFDVAGRRHVGVDATVSTVCTSRRQGARFXXXXXXXXXXXXKVLLSAFDSAFLNNCK 359
A T F A R+H GVDA + R+ +L A AFL +C
Sbjct: 315 AGTRFLWALRKHAGVDAADDVLPPGYRERTNGHGHVAMGWVPQIAILAHAAVGAFLTHCG 374
Query: 360 RNS 368
RNS
Sbjct: 375 RNS 377
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = -3
Query: 633 IMGRYSREPDNPAKSCKARGSNLRVHFKNT-YETAMAI----RKMPLVV 502
++ + + + K C RGS +R+H KN E A + R++P+VV
Sbjct: 530 VLAKMAERDEGTLKDCAQRGSFVRLHLKNVPTEIASKLVHPSRRLPVVV 578
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,192,824
Number of Sequences: 37544
Number of extensions: 352485
Number of successful extensions: 1027
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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