Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00806
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   120   9e-28
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...    72   4e-13
AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl t...    30   1.7  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  120 bits (289), Expect = 9e-28
 Identities = 57/85 (67%), Positives = 67/85 (78%)
 Frame = -2

Query: 508 RRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESN 329
           RRA  +L +V E KE +PFRRF+GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESN
Sbjct: 44  RRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESN 103

Query: 328 ADNKTLDVDRLVIDHIQVNRAPCLR 254
           A+ K LDVD LVI+HI V RA  LR
Sbjct: 104 AEYKGLDVDHLVIEHINVQRAAKLR 128



 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 32/40 (80%), Positives = 36/40 (90%)
 Frame = -1

Query: 254 RRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDA 135
           RRTYRAHGRINPYMSSPCHIEV L+E+ED V++  PTDDA
Sbjct: 129 RRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK--PTDDA 166



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -3

Query: 621 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPL 508
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPL
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPL 43


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 32/40 (80%), Positives = 36/40 (90%)
 Frame = -1

Query: 254 RRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDA 135
           RRTYRAHGRINPYMSSPCHIEV L+E+ED V++  PTDDA
Sbjct: 101 RRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK--PTDDA 138



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -3

Query: 621 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPL 508
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPL
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPL 43



 Score = 48.4 bits (110), Expect(2) = 3e-09
 Identities = 24/35 (68%), Positives = 27/35 (77%)
 Frame = -2

Query: 358 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLR 254
           L LL+NAESNA+ K LDVD LVI+HI V RA  LR
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLR 100



 Score = 30.3 bits (65), Expect(2) = 3e-09
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 508 RRAVRYLKNVIEKKECIPFRRF 443
           RRA  +L +V E KE +PFRRF
Sbjct: 44  RRAQAFLNHVKEHKEIVPFRRF 65


>AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl trna
           synthetase protein2 protein.
          Length = 551

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +2

Query: 62  LMSIPSSSSPFDAQAFSWKAFSSLGHHQ*GLPWRQHLRVR*DILRCGRETTCRG 223
           L+S   +   F + A+  +A ++L  H+  L    HL  + D+LRC R T+C G
Sbjct: 334 LLSGEGADELFGSYAYMQRAPNALHLHKEILRRMHHLH-QYDVLRCDRSTSCHG 386


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,482,575
Number of Sequences: 27780
Number of extensions: 296886
Number of successful extensions: 885
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)