Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00805
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    79   5e-16
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   2.0  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    27   2.0  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   3.4  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   7.9  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 79.4 bits (187), Expect = 5e-16
 Identities = 42/90 (46%), Positives = 57/90 (63%)
 Frame = +2

Query: 254 LVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRF 433
           LV + RL  T +F DKKSY  Y+K YMK + A+L+E  P++V VF+ N    +K IL  F
Sbjct: 68  LVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANF 125

Query: 434 KELQFFTGESMDCDGMVAMMEYRDFMVRKY 523
           K+  F+ GESMD D MV +M YR+  +  Y
Sbjct: 126 KDYDFYIGESMDPDAMVVLMNYREDGITPY 155



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 31/65 (47%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
 Frame = +3

Query: 54  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPSAEEADEGTD 230
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  Q GD+ I G NPSAE+A+E  +
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59

Query: 231 SAVES 245
              E+
Sbjct: 60  EGTET 64


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 608 ASLELLSYFLSNI*NFSSSRPCLKNIMIGICVP 510
           AS ELL+       NFS+ R CL+N ++  CVP
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVP 812


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 266 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 394
           ++L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 95  NKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 91   ISSPVIMSL*IFILMDWRRLKII 23
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 113 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 3
           +F  + + L T +  LI   +  +E+IK  KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 448 ELKFLKPAEDVFHYFVHVCFKYFNLVR 368
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,255
Number of Sequences: 5004
Number of extensions: 57142
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)