Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00805
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical p... 79 2e-15
AF101316-3|AAC69232.2| 508|Caenorhabditis elegans Hypothetical ... 29 2.4
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 29 4.2
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 29 4.2
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 4.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 4.2
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 29 4.2
Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical pr... 28 5.6
U40958-3|ABQ13075.1| 219|Caenorhabditis elegans Hypothetical pr... 28 5.6
U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell l... 28 7.4
AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein. 28 7.4
AF273803-1|AAG15152.1| 433|Caenorhabditis elegans nuclear recep... 27 9.8
>Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical
protein F25H2.11 protein.
Length = 181
Score = 79.4 bits (187), Expect = 2e-15
Identities = 37/69 (53%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Frame = +3
Query: 54 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGT 227
M IYKDI T DE+ SD++ MKLVD+++YE G+ V R +G+I + G NPSAEE D+G+
Sbjct: 1 MLIYKDIFTDDELSSDSFPMKLVDDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGS 60
Query: 228 DSAVESGVD 254
D VE G+D
Sbjct: 61 DEHVERGID 69
Score = 56.0 bits (129), Expect = 2e-08
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Frame = +2
Query: 254 LVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQ--VEVFKTNMNKVMKDILG 427
+VLNH+LVE + D + Y+K +MK ++ +E+ D+ V+ FK + + +L
Sbjct: 70 IVLNHKLVEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLA 129
Query: 428 --RFKELQFFTGESM---DCDGMVAMMEYRD 505
RFK L FF GE +G VA++EYRD
Sbjct: 130 KDRFKNLAFFIGERAAEGAENGQVAIIEYRD 160
>AF101316-3|AAC69232.2| 508|Caenorhabditis elegans Hypothetical
protein F52F10.2 protein.
Length = 508
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 406 FVHVCFKYFNLVRRLLFQFCY*FFHI 329
F+++C +Y RR L FCY F I
Sbjct: 137 FIYLCIEYLPTGRRYLMMFCYILFDI 162
>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 299 KKSYTLYLKDYMKKLVAKLEEK 364
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 299 KKSYTLYLKDYMKKLVAKLEEK 364
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
ZK945.9 protein.
Length = 3178
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 344 LIFSYSL*GTMCRISCHRRRMFRLACGSGLVNSALDGRVRALVS 213
++FSY L G + SC R+ R G++ + LD + A+VS
Sbjct: 2939 IVFSYCLAGAVFFTSCKMIRILRFNRRIGVLAATLDNALGAIVS 2982
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 344 LIFSYSL*GTMCRISCHRRRMFRLACGSGLVNSALDGRVRALVS 213
++FSY L G + SC R+ R G++ + LD + A+VS
Sbjct: 2939 IVFSYCLAGAVFFTSCKMIRILRFNRRIGVLAATLDNALGAIVS 2982
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 281 TYAFG--DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 445
T+ FG D++ Y++ +KD KKL + E+ + TN K + G+ K L+
Sbjct: 11103 TFNFGQKDQEQYSMVMKDVSKKLARQNAEEIQSGKLIPTTNEEKTGLALTGKNKNLK 11159
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 281 TYAFG--DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 445
T+ FG D++ Y++ +KD KKL + E+ + TN K + G+ K L+
Sbjct: 11103 TFNFGQKDQEQYSMVMKDVSKKLARQNAEEIQSGKLIPTTNEEKTGLALTGKNKNLK 11159
>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 299 KKSYTLYLKDYMKKLVAKLEEK 364
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical
protein ZK945.3 protein.
Length = 766
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 296 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKE 439
+KK+ L L +K + K+EEKA K+ ++K +KD L R K+
Sbjct: 22 EKKAKGLKLNKVDRKRIVKIEEKA-----ALKSKVDKAVKDELERLKK 64
>U40958-3|ABQ13075.1| 219|Caenorhabditis elegans Hypothetical
protein F09F9.5 protein.
Length = 219
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 358 FQFCY*FFHIVFEVQCVGFLVTEGVCF 278
+Q C+ F H+ +GF GVCF
Sbjct: 53 YQTCFGFMHVKIATCSIGFFALLGVCF 79
>U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell
lineage protein 23 protein.
Length = 665
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 257 LVNSALDGRVRALVSLFSRRIKTLDLDITLCSRHQPTGHFVNNFIDQFHFVS 102
+V+ A DG+++ + + L +I LCS Q TG D F VS
Sbjct: 438 IVSGAYDGKIKVWDLQAALDPRALSSEICLCSLVQHTGRVFRLQFDDFQIVS 489
>AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein.
Length = 665
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 257 LVNSALDGRVRALVSLFSRRIKTLDLDITLCSRHQPTGHFVNNFIDQFHFVS 102
+V+ A DG+++ + + L +I LCS Q TG D F VS
Sbjct: 438 IVSGAYDGKIKVWDLQAALDPRALSSEICLCSLVQHTGRVFRLQFDDFQIVS 489
>AF273803-1|AAG15152.1| 433|Caenorhabditis elegans nuclear receptor
NHR-56 protein.
Length = 433
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 520 FAYHKVSIFHHGNHAITIHGLPSK 449
F +H + + H GNH + IH L S+
Sbjct: 2 FFFHILRVLHFGNHVLIIHLLNSQ 25
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,471,674
Number of Sequences: 27780
Number of extensions: 309121
Number of successful extensions: 879
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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