Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00803
(483 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 25 0.42
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 23 1.3
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 23 1.7
AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49 ... 23 1.7
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 23 1.7
AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein. 23 2.3
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 21 5.2
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 21 6.9
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 21 6.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.1
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 9.1
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 9.1
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 9.1
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 25.0 bits (52), Expect = 0.42
Identities = 11/45 (24%), Positives = 27/45 (60%)
Frame = +3
Query: 102 PPRHYDLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNLAEI 236
P ++LN ++ E + +++R + +DR + ++ KKNL+++
Sbjct: 317 PELQHNLNILVDMCEQDIIQNDRRTRHLSDRVVALEAEKKNLSKV 361
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 23.4 bits (48), Expect = 1.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 50 CGVVNSHSSNGVIGG 94
CGV N H G++GG
Sbjct: 329 CGVHNLHGMPGILGG 343
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 23.0 bits (47), Expect = 1.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 265 SIWIFSFNWFISAKFFLN 212
+IW+FS W I+ F N
Sbjct: 174 AIWLFSLGWTIAPMFGWN 191
>AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49
protein.
Length = 134
Score = 23.0 bits (47), Expect = 1.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 279 LMPNVVYGSSRSIGLSLPS 223
LMPN+ YGS++ LP+
Sbjct: 53 LMPNIGYGSNKKTRHMLPT 71
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 23.0 bits (47), Expect = 1.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 265 SIWIFSFNWFISAKFFLN 212
+IW+FS W I+ F N
Sbjct: 50 AIWLFSLGWTIAPMFGWN 67
>AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein.
Length = 147
Score = 22.6 bits (46), Expect = 2.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 59 VNSHSSNGVIGGYRSS 106
V+SHSSNG+ G+ S
Sbjct: 76 VSSHSSNGIHTGFGGS 91
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 21.4 bits (43), Expect = 5.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 108 RHYDLNQAKELFESFVKEHNREYKD 182
RHYD + +E E++ EH + D
Sbjct: 174 RHYDRYKEEESNENYNWEHKETHID 198
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 21.0 bits (42), Expect = 6.9
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 156 KEHNREYKD-DADRELHYQSFKKNLAE 233
K+ NREYK+ D E Y +K L E
Sbjct: 6 KDRNREYKEKDRRYEKLYNEKEKLLEE 32
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 21.0 bits (42), Expect = 6.9
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -3
Query: 265 SIWIFSFNWFIS 230
+IW+FS W I+
Sbjct: 140 AIWLFSLGWTIA 151
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 285 NLLMPNVVYGSSRSIGLSLP 226
NL++P V+ S +G +LP
Sbjct: 200 NLIVPCVLISSMALLGFTLP 219
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 285 NLLMPNVVYGSSRSIGLSLP 226
NL++P V+ S +G +LP
Sbjct: 200 NLIVPCVLISSMALLGFTLP 219
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 285 NLLMPNVVYGSSRSIGLSLP 226
NL++P V+ S +G +LP
Sbjct: 200 NLIVPCVLISSMALLGFTLP 219
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 285 NLLMPNVVYGSSRSIGLSLP 226
NL++P V+ S +G +LP
Sbjct: 200 NLIVPCVLISSMALLGFTLP 219
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 285 NLLMPNVVYGSSRSIGLSLP 226
NL++P V+ S +G +LP
Sbjct: 200 NLIVPCVLISSMALLGFTLP 219
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 285 NLLMPNVVYGSSRSIGLSLP 226
NL++P V+ S +G +LP
Sbjct: 200 NLIVPCVLISSMALLGFTLP 219
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 285 NLLMPNVVYGSSRSIGLSLP 226
NL++P V+ S +G +LP
Sbjct: 268 NLIVPCVLISSMALLGFTLP 287
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 285 NLLMPNVVYGSSRSIGLSLP 226
NL++P V+ S +G +LP
Sbjct: 268 NLIVPCVLISSMALLGFTLP 287
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 285 NLLMPNVVYGSSRSIGLSLP 226
NL++P V+ S +G +LP
Sbjct: 237 NLIVPCVLIASMAVLGFTLP 256
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 20.6 bits (41), Expect = 9.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 368 TEVGELMSS*QAASIPT 318
T VGE SS AA +PT
Sbjct: 1293 TRVGEGQSSKVAAQVPT 1309
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 20.6 bits (41), Expect = 9.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 368 TEVGELMSS*QAASIPT 318
T VGE SS AA +PT
Sbjct: 1289 TRVGEGQSSKVAAQVPT 1305
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,593
Number of Sequences: 438
Number of extensions: 2679
Number of successful extensions: 20
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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