Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00802
(379 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo... 26 2.3
SPCC1682.05c |||signal recognition particle subunit |Schizosacch... 25 3.0
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 3.9
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 3.9
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 5.2
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 5.2
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 24 6.9
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 24 6.9
SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom... 24 6.9
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 24 9.1
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 24 9.1
SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||... 24 9.1
>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 400
Score = 25.8 bits (54), Expect = 2.3
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 125 RSLKYRTCTKKKKFGHGMAQATSKFGLTLLELNFTN-SLAK 244
R L+ C +KF + +TSKF L LL+L + N SL K
Sbjct: 331 RKLQLEICYVLQKFMPNVKDSTSKFSL-LLQLYYCNQSLTK 370
>SPCC1682.05c |||signal recognition particle subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 25.4 bits (53), Expect = 3.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 276 LLLYPKSRHRFFANEFVKFNSRRVN 202
LLL +S H + NE++K+ S R++
Sbjct: 64 LLLEARSDHFYEGNEYIKYLSHRIH 88
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 3.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 155 KKKFGHGMAQATSKFGLTLLELNFTNSLAKNLCRDFGYNSK 277
KKK+ H M SKF N +SL K+ RD N++
Sbjct: 178 KKKYPHSMDAEISKFKWDSNNNNDWSSLMKDCFRDVVNNNR 218
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 3.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 40 FAMAFVSYRDDGIPYAAKFTYY 105
+ ++F S RDD + YA T+Y
Sbjct: 91 YQISFTSIRDDSVIYAQSGTFY 112
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 24.6 bits (51), Expect = 5.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 164 FGHGMAQATSKFGLTLLELNFTNSLAKNLCRDFGYNSKN 280
FG+G A S FGL+ L+ TN +N D YN ++
Sbjct: 334 FGNGEATENSAFGLSSLQFFETN---QNSYFDDSYNQES 369
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 24.6 bits (51), Expect = 5.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 152 KKKKFGHGMAQATSKFGLTLLELNFTNSLAKNL 250
KK GH +++ + + L+ NFTN KNL
Sbjct: 236 KKVYVGHHVSRRERQSKVEALKANFTNVYIKNL 268
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 24.2 bits (50), Expect = 6.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 130 FEVQDLYKEEEIRSW 174
FE+ L+ EEE+R W
Sbjct: 297 FELAHLFSEEEVRHW 311
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 24.2 bits (50), Expect = 6.9
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 55 VSYRDDGIPYAAKFTYYDMQLPQSEFEVQDLYKEEEIRSWDGTSDFEVRINPSGVKFYKF 234
+S +++ P + Y E +VQ L+KE+E ++ S EVR G FY+F
Sbjct: 171 LSQKEEYKPEKPIYGDYMPSFEVDEEKVQKLWKEDEQQAVHYDSTKEVR--NKGTAFYQF 228
>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 161
Score = 24.2 bits (50), Expect = 6.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 71 MEYLTQPNLRIMTCNYLSRSLKYRTCTKKKKFGH 172
+EY T+P+ + TC + R +Y KK K H
Sbjct: 103 LEYQTKPHPTVPTCQFKIRYARYG--DKKVKSAH 134
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 23.8 bits (49), Expect = 9.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 19 RELYDGSFAMAFVSYRDDGIPYAAKF 96
RE+ G+FA + Y D+ YA KF
Sbjct: 14 REIGTGAFASVRLCYDDNAKIYAVKF 39
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 23.8 bits (49), Expect = 9.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 61 YRDDGIPYAAKFTYYDMQLPQSEFEVQDLYKEEEIR 168
+RD + A+ T +D+ Q+E EV EEE++
Sbjct: 1295 FRDQQASFLAQNTDFDIGEDQTEDEVTTEEPEEEVK 1330
>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 186
Score = 23.8 bits (49), Expect = 9.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 224 NLTPEGLIRTSKSLVPSHDRISSSLYK 144
NLTPE L+ SKS +H + +K
Sbjct: 41 NLTPEKLVIDSKSGANAHYAVQIDFFK 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,510,324
Number of Sequences: 5004
Number of extensions: 29307
Number of successful extensions: 79
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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