Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00802
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0261 + 27978341-27978391,27978539-27978683,27978794-279788...    29   0.92 
08_02_1547 + 27795664-27795674,27795743-27795892,27796182-277979...    29   1.6  
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727...    28   2.1  
12_01_0483 - 3799049-3799639,3800017-3800143,3800463-3800881           26   8.6  
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    26   8.6  
04_04_1211 + 31783076-31783680,31784162-31784427,31784546-31785378     26   8.6  

>01_06_0261 +
           27978341-27978391,27978539-27978683,27978794-27978861,
           27979630-27980073,27980163-27980681,27981002-27981214,
           27981650-27981805,27982753-27982941
          Length = 594

 Score = 29.5 bits (63), Expect = 0.92
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 73  GIPYAAKFTYYDMQLPQSEFEVQDLYKEEEIRSWDGTSDFEVRINPSG 216
           G P ++KF  +  Q   + ++ +D+  +E  RSW+ T   + R   +G
Sbjct: 245 GYPLSSKFAVHTNQGKDNLYQSKDIGMKESGRSWNSTEKLKARSKLNG 292


>08_02_1547 +
           27795664-27795674,27795743-27795892,27796182-27797906,
           27799447-27799546,27799657-27800268,27800399-27800521,
           27800905-27801039,27801108-27801209,27801716-27801778,
           27801854-27802045,27802121-27802258,27802632-27802694,
           27803068-27803466
          Length = 1270

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 95  LRIMTCNYLSRSLKYRTCTKKK 160
           + I+TC+Y+  SLK  +CT KK
Sbjct: 439 ITILTCSYVESSLKNMSCTCKK 460


>12_02_0811 -
           23370455-23370472,23372279-23372538,23372645-23372713,
           23372979-23373105,23373187-23373422,23373509-23373678,
           23373855-23373935,23374013-23374084,23374273-23374344,
           23374450-23374588,23375141-23375643,23376817-23377010,
           23377952-23378488
          Length = 825

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 13  WKRELYDGSFAMAFVSYRDDGIPYAAK 93
           +K E+  G F   F+ Y +DG P A K
Sbjct: 626 FKEEIGKGGFGTVFLGYLEDGTPVAVK 652


>12_01_0483 - 3799049-3799639,3800017-3800143,3800463-3800881
          Length = 378

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 149 TKKKKFGHGMAQATSKFGLTLLELNFTNSLA 241
           TK+++F     ++TSK G T+L+ N+  SLA
Sbjct: 227 TKRRQFARRRNRSTSKSGSTVLQ-NYIKSLA 256


>08_01_0321 +
           2872609-2873027,2873477-2873905,2874743-2874944,
           2875909-2875947,2876309-2876354,2877380-2877922,
           2878827-2880847,2880972-2881215,2881642-2881684,
           2881923-2881962,2883580-2883675,2883712-2883759,
           2883964-2884290
          Length = 1498

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 41  LLWH-L*VIGTMEYLTQPNLRIMTCNYLSRSLKYRTCTKKKKFGHGMAQATS 193
           +LW+ L   G  +YL  PN+ ++T   L   LK     K+ + G    ++TS
Sbjct: 244 ILWNILHRFGLEKYLNCPNMEMLTVQELIGELKQFIKGKRSRMGSQCYKSTS 295


>04_04_1211 + 31783076-31783680,31784162-31784427,31784546-31785378
          Length = 567

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 28  YDGSFAMAFVSYRDDGIPYAAKFTYYDMQLP 120
           YD    +  V  RD   P A +FTY D+ LP
Sbjct: 388 YDEEARLVRVRVRDTLDPSALRFTYQDVGLP 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,711,420
Number of Sequences: 37544
Number of extensions: 157929
Number of successful extensions: 403
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)