Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00802
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71258-4|CAA95783.2|  423|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U53154-4|AAC25851.1|  346|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U41539-3|AAB52496.1|  203|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z78540-2|CAB01737.1|  900|Caenorhabditis elegans Hypothetical pr...    26   7.8  

>Z71258-4|CAA95783.2|  423|Caenorhabditis elegans Hypothetical
           protein C01H6.4 protein.
          Length = 423

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 228 VKFNSRRVNPNFEVACAIP*PNFFFFV 148
           +K+N R V+P +E  C +  P   FF+
Sbjct: 260 LKYNDRMVSPLYEHLCHVDYPTTLFFI 286


>U53154-4|AAC25851.1|  346|Caenorhabditis elegans Hypothetical
           protein C33G8.9 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 92  NLRIMTCNYLSRSLKYRTCTKKKKFGHGMAQATSKFGLTLLELNFT 229
           N+ +++CN + RS    TCT  K +     +    +G ++  LNFT
Sbjct: 89  NISLLSCNIIPRSCSKLTCT-VKNWPDLDKKRRDLYGGSMYNLNFT 133


>U41539-3|AAB52496.1|  203|Caenorhabditis elegans Hypothetical
           protein K05G3.1 protein.
          Length = 203

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 37  SFAMAFVSY-RDDGIPYAAKFTYYDMQLPQSEFEVQDLYKEEEIRSWDGTSDF 192
           S A  F ++ +++ +  A K+   D+Q+ Q   E   L KE  I  W+  SD+
Sbjct: 126 SKARMFATFGKEEFLENAIKYVTKDLQVNQKSLEALLLKKEIVITKWETFSDW 178


>Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical
           protein C47B2.1 protein.
          Length = 488

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 162 FFFFVQVLYFKLRLR*LHVIIRKFGCVRYSIVPITHKCHSKGT 34
           +FF V   YF L    L+  I KF CV +  + I  +C+  G+
Sbjct: 31  YFFTVDFPYFFLTKCSLNFRITKFFCVVFGSLNIILRCNDYGS 73


>Z78540-2|CAB01737.1|  900|Caenorhabditis elegans Hypothetical
           protein C33G3.4 protein.
          Length = 900

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +1

Query: 13  WKRELYDGSFAMAFVSYRDDGIPYAAKFTYYDMQLPQSEFEVQDLYKEEEIRS 171
           WK     G + +AF     D   Y A+   Y +Q+P+   +  D Y+    +S
Sbjct: 226 WKTRFAHGKWKVAF---EFDTFHYGARTIEYSVQIPELGIKESDYYRLSATKS 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,067,206
Number of Sequences: 27780
Number of extensions: 156496
Number of successful extensions: 362
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)