Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00801
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    29   0.91 
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    28   1.6  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   2.8  
SPCC338.04 |cid2||caffeine induced death protein Cid2|Schizosacc...    27   2.8  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.8  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   2.8  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    27   2.8  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   3.7  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.9  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    26   6.4  
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    25   8.5  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   8.5  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   8.5  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   8.5  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   8.5  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 515  SRTTGASTPSRPTPTRELTTSAGTIPRTPVLRTWASWTSPRAT 643
            SRT+  ST   P PT  +T SA  I   P  +   ++  P A+
Sbjct: 899  SRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTAS 941


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 21/73 (28%), Positives = 28/73 (38%)
 Frame = +2

Query: 215 TQQESVHEGWERPRAKFISPANVKLPEQVDWRKHGAVTDIKDQGKCGSCWSFSTTGALEG 394
           T    V   W   + K ISP +V     V W ++  V    D   C S W   T G +  
Sbjct: 88  TSTGRVSSKWIVDKNKEISPYSV-----VQWIENDMVFATGDDNGCVSVWDKRTEGGIIH 142

Query: 395 QHFRQSGYLVSLS 433
            H     Y+ S+S
Sbjct: 143 THNDHIDYISSIS 155


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 386 LEGQHFRQSGYLVSLSEQNLIDCSEQYGNNGCNGGLMD-NAFSTSRTTGASTP 541
           +EG++ +    ++S S   + + +   G NG NGG+   +  ST+RT+ A  P
Sbjct: 1   MEGENSKSVHPILSHSTSVVSERASSSGVNGTNGGMKQVSPVSTARTSIARRP 53


>SPCC338.04 |cid2||caffeine induced death protein
           Cid2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 167

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = +2

Query: 188 YERLQQNCQTQQESVHEGWERPRAKFISPANVKLPEQVDWRKHGAVTDIKDQ 343
           +E  ++ CQ  ++ + EGW   R +F+      +  Q+D  ++ + + +K Q
Sbjct: 46  HETQEERCQNVKKKLFEGW-LSRDQFLKECQTIVRSQLDQDRNTSKSPLKSQ 96


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 348 FPWSLMSVTAPCFLQSTCSGSFTLAGDMNLARG 250
           +PWS   V    +L     G F LAGD N   G
Sbjct: 399 YPWSQPVVNITDYLSDNGDGHFVLAGDGNQTIG 431


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +1

Query: 586 NPKNTGAEDVGFVDIPEGDEQKLMEAVATVGPVSVAIDASHTSFPALLQR 735
           NP     + +    IP+G     +E   T  P S A+   H SFPA   R
Sbjct: 226 NPSVLQGQVMNNPTIPKGTPSTSIEGAKTSIPPSHAMQNPHNSFPASADR 275


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 20/88 (22%), Positives = 39/88 (44%)
 Frame = +3

Query: 9   KLQHRLNYESEVEDNFRMKIYAEHKHIIAKHNQKYEMGLVSYKLGMNKYGDMLHHEFVKT 188
           K ++ +    E  D+F  +++ E  +I  K  ++  +   SYK G+ +Y +     FV  
Sbjct: 39  KYRYEMTSTEEDIDSFFSRVFGEKNYISDKSLREQIVTHKSYKHGLKRYNE----PFVSV 94

Query: 189 MNGFNKTAKHNKNLYMKGGSVRGLSSYR 272
            N        N   Y++ G+   + SY+
Sbjct: 95  GNAVIDVCLLNH--YLESGNFSTIPSYK 120


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 461 QYG-NNGCNGGLMDNAFSTSRTTGASTPSRPTPTRELTTSAGTIPRT 598
           QYG +NG  G +  ++ ++S T   +T S  TPT   T++  T   T
Sbjct: 830 QYGCDNGALGPVQSSSTTSSITPTPTTTSSITPTPTTTSTTTTAQST 876



 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/48 (22%), Positives = 21/48 (43%)
 Frame = +2

Query: 482  NGGLMDNAFSTSRTTGASTPSRPTPTRELTTSAGTIPRTPVLRTWASW 625
            +G L  N  +T++ T   TP+  T T    T+        + +  ++W
Sbjct: 924  DGSLSPNTVTTTKATTTFTPTPTTTTTPTPTTTSATSTNVIAQCGSAW 971


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +1

Query: 571 DKCRYNPKNTGAEDVGFVDIPEGDEQKLMEAVATVGPVSVAIDASHTSFP 720
           +K  Y   +T A     VD+P   E +    V   GP S+    S TS P
Sbjct: 112 NKTSYEQADTNATSKSLVDLPVSLEVRGRNTVTFYGPTSI-FGTSFTSSP 160


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 514 IKDNGGIDTEQTYPYEGVDDKCRYN 588
           IK NGGI    T P   +D K  YN
Sbjct: 180 IKKNGGIKFNHTVPLTHMDYKMAYN 204


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 622 VDIPEGDEQKLMEAVATVGPVSVAID 699
           +D+P G  + L+ A  T  P SVA+D
Sbjct: 237 IDLPAGPSEVLVIADETCNPESVALD 262


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 150 CSCPACKKRGPFRTSG 103
           C+CP C+K  P  T G
Sbjct: 144 CTCPLCRKEVPHETVG 159


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
            Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 395  QHFRQSGYLVSLSEQNLIDCSEQYGN 472
            QHF + G +     QN+  C EQ  N
Sbjct: 947  QHFGKQGTIFDFHSQNMRQCREQLHN 972


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 728 SRAGKLVCEASMATETGPTVATASISFCS-SPSGMSTKPTSSAPVFLGLYLHLSSTPS 558
           S   ++V   +  + TG    T+S +  S  PS   T PTSS+ +     L  +S+P+
Sbjct: 612 SSTSEIVSTPASNSNTGSLNGTSSFNVNSVGPSSSQTTPTSSSSITGSQSLKETSSPA 669


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 701  ASMATETGPTVATASISFCSSPSGMSTKPTSSAPVFLGLYLHLSSTP 561
            +S A  T P + ++++   S+P   ST   +S P+     ++ SSTP
Sbjct: 1646 SSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVN-SSTP 1691


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,699
Number of Sequences: 5004
Number of extensions: 55980
Number of successful extensions: 232
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)