Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00799
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    32   0.004
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   1.8  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    22   5.6  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   7.4  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   9.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.8  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 32.3 bits (70), Expect = 0.004
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 36  KWTSSDF-CTNFTCVNLNGTLQVQSSNETCPEISDAERKQFVLKEQKVPGKCC 191
           +WTSSD  CT   C N N           CP+++  +     +K +KVPG+CC
Sbjct: 685 QWTSSDNPCTTCFCENGNNKCFTME----CPQVTCPDN----MKLEKVPGECC 729



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 574 LKEEKIPGKCC 606
           +K EK+PG+CC
Sbjct: 719 MKLEKVPGECC 729



 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = +2

Query: 341 ETDCQPGWKYFPAPAECCGRCKPVACVVE 427
           +  C    K    P ECC  C     +VE
Sbjct: 712 QVTCPDNMKLEKVPGECCAICVNATSLVE 740


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 485 TCADLHGTYKCK 520
           TC DL G+Y CK
Sbjct: 198 TCLDLIGSYSCK 209



 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 473 CTNYTCADLHGTYKC 517
           C N TC D+  +++C
Sbjct: 156 CNNGTCEDIGNSHRC 170


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 706 ACTSGWCTGPASSTPEPPDIFCRHLDTRPARPWD 605
           A +SG CT       E  +   RHL  + AR W+
Sbjct: 69  ALSSG-CTKCNQKQKETAEKVIRHLTQKRARDWE 101


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/48 (25%), Positives = 18/48 (37%)
 Frame = -1

Query: 664 PEPPDIFCRHLDTRPARPWDSTCPGSSPL*ARTVSSQPPTLQDKSRLS 521
           P PP ++  H       P     P   PL    ++  PP  Q +  L+
Sbjct: 163 PPPPPVYTHHYARYHPYPNFGVPPAGIPLQNPGLNLNPPVTQTQLPLN 210


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 159 LKEQKVPGKCC 191
           +K ++VPG CC
Sbjct: 327 MKPKEVPGPCC 337


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 158 HELLPFSIRYLRASLIRALDLEGAIEV 78
           +++LPF ++    S  RA+D+    EV
Sbjct: 424 YQVLPFGLKTAVGSFSRAMDVVLGTEV 450


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,024
Number of Sequences: 336
Number of extensions: 3176
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)