Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00799
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    28   1.1  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    28   1.5  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    27   2.6  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    27   3.5  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   4.6  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    26   4.6  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    26   6.0  
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    25   8.0  

>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 441 GLSRPSTTQATGLQRPQHSAGAGKYFQPGWQSVSQRCSE 325
           G S  ST   + ++ P  SAG   YF P W S+ Q   E
Sbjct: 135 GYSDVSTGWDSAVKEPLASAGYPIYFVPSWTSLGQGALE 173


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
 Frame = -2

Query: 426 STTQATGLQRPQHSAGAGKYFQPGWQSVSQRC-SEATERRP-PPXSCTHR*LSHKFSVDA 253
           ++T +T  Q+P  S  +   F P  Q+ S    S A    P  P S TH     +     
Sbjct: 43  NSTSSTSSQKPNTSFTS--LFGPRKQTTSSPSFSHAAPLHPLSPPSFTHS--QPQIQAQP 98

Query: 252 SSRRPGISDLPLDTPHVRSWGSTSLGPSAPSARTASVQHPI 130
             RRP +     D P++ S  S+ LG S   +  A V +PI
Sbjct: 99  VPRRPSL----FDRPNLVSRSSSRLGDSPSLSPVAQVANPI 135


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -2

Query: 264 SVDASSRRPGISDLPLDTPHVRSWGSTSLGP----SAPSARTASVQHPISPGKSHSSF 103
           S+D S+R    S+   + PH+R  G  +LGP     A     A+V++ I+ G+ H ++
Sbjct: 332 SMDKSNRVIMDSEYRTNIPHIRVIGDATLGPMLAHKAEDEGIAAVEY-IAKGQGHVNY 388


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 219 LDTPHVRSWGSTSLGPSAPSARTASVQHP 133
           +DT  V S GST++G S  +  T++  HP
Sbjct: 1   MDTTAVASKGSTNVGSSTDTLSTSASLHP 29


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 655 PDIFCRHLDTRPARPWDSTCPGSSPL 578
           PDI C +L  RP    DS  PG + L
Sbjct: 79  PDIHCNNLSKRPVGFTDSYVPGEALL 104


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 438 LSRPSTTQATGLQRPQHSAGAGKYFQPGW 352
           LSRPS  +  G ++   +A  G  F P W
Sbjct: 73  LSRPSFNEVVGHKKFDETASKGDTFGPSW 101


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 700 TSGWCTGPASSTPEPPDIFCRHLDTRPARPWDSTCPG 590
           T GW  G A S+         +LD  PAR W+  C G
Sbjct: 245 TKGWFNGFAGSSAT-----LTYLDIVPARTWNHLCHG 276


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 650 YILSPSRHATGSTLGQHLPGIFSSLSTNCFFTASDTSGQV 531
           Y+  PS+ A G   G   P I +S++TN    ASD   Q+
Sbjct: 77  YVFVPSKAALGRACGVSRPVISASITTN---EASDLLPQI 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,986
Number of Sequences: 5004
Number of extensions: 47265
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)