Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00799
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0044 - 10913591-10913720,10914268-10914572,10915191-109153... 30 2.1
03_04_0154 - 17749569-17749868 29 2.7
01_06_0309 - 28373346-28373403,28373504-28373571,28374012-283741... 29 2.7
12_01_0238 - 1789114-1790211 29 3.6
09_01_0173 + 2495864-2496312,2497420-2497457,2497915-2498123,249... 28 6.3
08_02_0588 + 19036509-19039235 28 6.3
05_04_0130 - 18285430-18285951 28 6.3
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 28 8.3
10_08_0308 + 16660751-16661450,16661656-16661819,16662615-166628... 28 8.3
03_05_0121 + 21013752-21014162,21014274-21015026,21016040-21016444 28 8.3
03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684 28 8.3
02_05_0579 + 30114127-30114177,30114691-30115386,30115883-301160... 28 8.3
>06_02_0044 -
10913591-10913720,10914268-10914572,10915191-10915391,
10916620-10917042
Length = 352
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 8 GWRGEANRREVDVLGLLHELHLREPQWHPPSPK 106
G GE++ + G+ L + EP WHPP P+
Sbjct: 255 GLTGESSAGDYQDCGVSPVLLMGEPPWHPPGPE 287
>03_04_0154 - 17749569-17749868
Length = 99
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/46 (45%), Positives = 22/46 (47%)
Frame = +3
Query: 549 GGCEETVRAQRGEDPGQVLSQGRAGRVSRWRQNISGGSGVDDAGPV 686
GG V G GQV + G AG V RWRQ GG G AG V
Sbjct: 18 GGGNSAVEVGSG---GQVEAGGSAGAV-RWRQEAEGGGGA-GAGEV 58
>01_06_0309 -
28373346-28373403,28373504-28373571,28374012-28374132,
28374351-28374739
Length = 211
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 233 IPGRRELASTENLCESYRCVQEXGGGLRSVASEQRCETDCQPGWKYFPA 379
+ G ELAS + YRC GGG S + + T C+ G + PA
Sbjct: 39 VAGSSELASRNQI--RYRCHSRRGGGEASELAGKSSATACEEGEREKPA 85
>12_01_0238 - 1789114-1790211
Length = 365
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 423 WKGGRGPSGRAGRL 464
WKGGRG +G AGRL
Sbjct: 85 WKGGRGGAGTAGRL 98
>09_01_0173 +
2495864-2496312,2497420-2497457,2497915-2498123,
2498894-2499205
Length = 335
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1
Query: 664 PEPPDIFCRHLDTRPARPWDSTCPGSSPL*ARTVSSQPP 548
PE ++F +++D P + S+ ++ ART+S QPP
Sbjct: 252 PEKFELFGQNIDLTPLKGIFSSIENAASSVARTISGQPP 290
>08_02_0588 + 19036509-19039235
Length = 908
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +3
Query: 567 VRAQRGEDPGQVLSQGRAGRVSRWRQNISGGSGVDDAGPVHQP 695
V A G G +GR G W + GG G + AG V P
Sbjct: 83 VAAAGGRGEGGDRMRGRGGEEGTWTAHGGGGRGAERAGAVVAP 125
>05_04_0130 - 18285430-18285951
Length = 173
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 207 HVRSWGSTSLGPSAPSARTASVQHPISPGKSHSSFGLGG 91
HVRSWG+ SL A SA A ++ G + +GG
Sbjct: 74 HVRSWGAHSLAAGAASALIAWAITALAFGLACKEIHIGG 112
>10_08_0911 -
21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +3
Query: 6 VDGEEKPIGEKWTSSDFCTNFTCVNLNGTLQVQSSNETCPEISDAERKQFVLKEQKVPGK 185
V E K E T CT+ TC G+ V S NE+CPE + +Q P K
Sbjct: 732 VSSENKNGLEHGTGEGSCTDATC----GSPTVISCNESCPEEDGQGSNALLHHKQTEPPK 787
>10_08_0308 +
16660751-16661450,16661656-16661819,16662615-16662800,
16663297-16663533
Length = 428
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 462 DVQLSPTGLSRPSTTQATGLQRPQHSAGAG 373
DV LSP L P+ A+ L P H A AG
Sbjct: 173 DVLLSPPYLVDPNRASASSLSTPLHLAAAG 202
>03_05_0121 + 21013752-21014162,21014274-21015026,21016040-21016444
Length = 522
Score = 27.9 bits (59), Expect = 8.3
Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Frame = -2
Query: 405 LQRPQHSAGAGKYFQPGWQSVSQRCSEATERRPPPXSCTHR*LSHKFSVDASSRRP-GIS 229
L PQ SAG+ + S T RPPP + V + P
Sbjct: 188 LSSPQQSAGSNVLSMDAADAAGAASSGYTSARPPPLDLAGQLAMGSRPVQLLAATPFSAP 247
Query: 228 DLPLDTPHVRS---WGSTSLGPSAPSARTASVQ-HPISP 124
P P R+ + P +P+ T VQ HP++P
Sbjct: 248 SSPWGKPFARNAQFFQFPHSSPVSPTTPTGPVQVHPVTP 286
>03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684
Length = 222
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 618 AGRVSRWRQNISGGSGVDDAGPVHQPD 698
A SRWR + GSG DD G PD
Sbjct: 113 ASTASRWRASAEQGSGEDDYGGSVVPD 139
>02_05_0579 +
30114127-30114177,30114691-30115386,30115883-30116083,
30116354-30116658,30116944-30117073
Length = 460
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 8 GWRGEANRREVDVLGLLHELHLREPQWHPPSPK 106
G GE++ G+ + + EP WHPP P+
Sbjct: 363 GLTGESSAGYFQDCGVSSMILMGEPPWHPPGPE 395
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,119,994
Number of Sequences: 37544
Number of extensions: 419031
Number of successful extensions: 1672
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1672
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -