Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00798
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0330 + 24137188-24137619                                         29   2.0  
08_02_0066 - 11852258-11852461,11852542-11852957,11853778-11854333     28   2.7  
03_01_0240 - 1862699-1864186,1864245-1864442                           28   2.7  
09_04_0460 - 17779111-17780184                                         28   3.5  
11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472...    27   4.6  
11_05_0077 - 18866707-18867334,18867410-18867555                       27   6.1  
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    27   8.1  

>05_05_0330 + 24137188-24137619
          Length = 143

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -3

Query: 384 CNMVRCSGAVVWDLGGFHCHGWIMKPKYSGLVATTPLFPHXXXXXXXXXXXPASVPAGTP 205
           C+ +  S + + DL    C G IM+  + G+V  +PL               A++  GTP
Sbjct: 49  CSSIDPSSSSLLDLAFISCGGGIMEYTWVGVVRPSPLCARTPWPSSHFLATVAALATGTP 108


>08_02_0066 - 11852258-11852461,11852542-11852957,11853778-11854333
          Length = 391

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 287 RLPRCSPTQGGPVPVHARVQLQSLPVLPILDEE 189
           R+ RCSP++   VPV A ++    P + +++ E
Sbjct: 13  RISRCSPSRRWFVPVAAAIESHPTPAIHVVERE 45


>03_01_0240 - 1862699-1864186,1864245-1864442
          Length = 561

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 390 IYCNMVRCSGAVVWDLGGFHCHGWIM 313
           + CN +      +W +  FHC+GW M
Sbjct: 225 LLCNDMTSMPVYLWTVPMFHCNGWCM 250


>09_04_0460 - 17779111-17780184
          Length = 357

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +3

Query: 90  DSYGDRKTWGSNDSSEKRHTWFLYPVKVGDQQLFLIXNREYRQGL 224
           D +GD          +  H W++  V + +  +  I   EYR G+
Sbjct: 107 DGFGDGDEEAGGGGGDVHHVWYIRTVGLDEATITSIATAEYRAGV 151


>11_04_0330 -
           16446685-16446776,16446968-16447119,16447172-16447281,
           16447518-16447619,16447705-16447854,16448195-16448350,
           16448552-16448713,16449549-16449638,16450152-16450271,
           16451323-16451418,16451502-16451638,16453400-16453622
          Length = 529

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 212 PAGTEAGRERGLVRDRLVWGNNGVVATNPEYFGFIIQPWQ*NPPRSQTTAPLHL 373
           P+G +  +ER +  D  V   +G V ++P     + +PW   PP+    APL +
Sbjct: 73  PSGVQ--KERMVAEDMYVLSADGKVLSSP-----VSKPWPNKPPKCTDCAPLFM 119


>11_05_0077 - 18866707-18867334,18867410-18867555
          Length = 257

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 259 PCVGEQRGSRHQP*VLRLHNPAVAVKP 339
           P VG +RG+R  P +L  H P V ++P
Sbjct: 68  PGVGARRGARAGPRLLPPHRPPVPLRP 94


>09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,
            8511209-8511523,8511576-8511682,8512559-8512629,
            8512952-8513029,8513390-8513454,8514224-8514274,
            8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -2

Query: 274  VPPHKAVPYQSTLASSFSPCRYSRFXMRNSCWSPTFTGYKNQVCLFSLESFD 119
            +P +K+VP+   +  S  P  Y R  + +      F  +     LFSL+  +
Sbjct: 1235 LPSYKSVPHDEVVLESLQPHNYIRQLVISGFRGLNFCSWLGDRSLFSLQELE 1286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,744,294
Number of Sequences: 37544
Number of extensions: 253925
Number of successful extensions: 729
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)