Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00798
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY241928-1|AAO85277.1|  806|Caenorhabditis elegans xylosyltransf...    31   0.25 
AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide O-xyl...    31   0.25 
AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulv...    31   0.25 
AL021481-3|CAD90182.1|  459|Caenorhabditis elegans Hypothetical ...    28   2.4  
Z47809-7|CAA87783.1|  662|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z47808-10|CAA87778.1|  662|Caenorhabditis elegans Hypothetical p...    28   3.1  
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    26   9.5  

>AY241928-1|AAO85277.1|  806|Caenorhabditis elegans
           xylosyltransferase protein.
          Length = 806

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 153 FLYPVKVGDQQLFLIXNREYRQGLKLDASVDWYG 254
           F Y     D ++F I  RE+ Q L++D   DW G
Sbjct: 368 FEYVFSECDNRMFRIGKREFPQNLRIDGGSDWVG 401


>AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide
           O-xylosyltransferase protein.
          Length = 806

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 153 FLYPVKVGDQQLFLIXNREYRQGLKLDASVDWYG 254
           F Y     D ++F I  RE+ Q L++D   DW G
Sbjct: 368 FEYVFSECDNRMFRIGKREFPQNLRIDGGSDWVG 401


>AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulva
           protein 6 protein.
          Length = 806

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 153 FLYPVKVGDQQLFLIXNREYRQGLKLDASVDWYG 254
           F Y     D ++F I  RE+ Q L++D   DW G
Sbjct: 368 FEYVFSECDNRMFRIGKREFPQNLRIDGGSDWVG 401


>AL021481-3|CAD90182.1|  459|Caenorhabditis elegans Hypothetical
           protein Y43F4B.5b protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 140 ETHLVLIPGEGGRPTAIPHXESGVPAGTEAGRERGLVRDRL 262
           + HL+   G GG   A+ H ES      E  R R  +R+RL
Sbjct: 408 QIHLLDGTGSGGHQEALQHIESRSEVPDENRRSRSGIRERL 448


>Z47809-7|CAA87783.1|  662|Caenorhabditis elegans Hypothetical
           protein D2013.9 protein.
          Length = 662

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 266 WGNNGVVATNPEYFGFIIQPWQ*NPPRSQTTAP 364
           W +N + A +PE+  +I QPW       +T  P
Sbjct: 255 WASNVITAQHPEWRKYIEQPWAAQDFSKETMIP 287


>Z47808-10|CAA87778.1|  662|Caenorhabditis elegans Hypothetical
           protein D2013.9 protein.
          Length = 662

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 266 WGNNGVVATNPEYFGFIIQPWQ*NPPRSQTTAP 364
           W +N + A +PE+  +I QPW       +T  P
Sbjct: 255 WASNVITAQHPEWRKYIEQPWAAQDFSKETMIP 287


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
           protein F47C12.1 protein.
          Length = 1827

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 375 VRCSGAVVWDLGGFHCHG 322
           ++CS    WDLG   C G
Sbjct: 873 IKCSPDATWDLGDLRCEG 890


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,631,126
Number of Sequences: 27780
Number of extensions: 207163
Number of successful extensions: 470
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)