Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00798
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.15 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   2.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   2.4  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   5.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   5.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   9.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   9.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   9.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    20   9.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   9.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.2 bits (55), Expect = 0.15
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 305 STQGWWRLPRCSPTQGGPVPVH 240
           ST+    LP   P QG PVPVH
Sbjct: 223 STESKADLPLLCPAQGFPVPVH 244


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 111 TWGSNDSSEKRHTWFLYPVKVGDQQLFLIXNREYRQGL 224
           +W  NDS    H +F +  + G+  +    N +++ GL
Sbjct: 203 SWAKNDSWRITHNFFYFDPRYGNYNINGF-NFQWKDGL 239


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 107 PVAVAVYVHVQFQVHIVFGVLYLED 33
           P +  +++ V   VH+V  VLYL D
Sbjct: 563 PFSNTLWILVMVSVHVVALVLYLLD 587


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 181 WSPTFTGYKNQVCLFSLESFDPQ 113
           W P F  +++     + +SFDP+
Sbjct: 397 WIPAFAIHRDSAIYPNPDSFDPE 419


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 145 CLFSLESFDPQV 110
           C+ S ES++PQV
Sbjct: 114 CILSSESYNPQV 125


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = +3

Query: 21  NNNVIFKIQNTEHNMYLKLDVNVDSYGDRKTWGSNDSSEKRH 146
           N NV+    N EH  +  L  NV+         + D+ +  H
Sbjct: 383 NQNVLNNDLNLEHVNFQILGANVNDLIRNSRCANFDNQDNNH 424


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 147 TWFLYPVKVGDQQLFLIXNREYRQGLK 227
           TW  Y     +  ++ I N E+R+  K
Sbjct: 311 TWLGYSNSAFNPIIYSIFNTEFREAFK 337


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 324 GWIMKPKYSGLV 289
           GW + P+YS LV
Sbjct: 31  GWNVPPEYSDLV 42


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = -3

Query: 351 WDLGGFHCHGWI 316
           W+LG   C  W+
Sbjct: 104 WELGPMLCDSWV 115


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 324 GWIMKPKYSGLV 289
           GW + P+YS LV
Sbjct: 31  GWNVPPEYSDLV 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,491
Number of Sequences: 438
Number of extensions: 2713
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)