Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00797
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 28 1.6
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 2.7
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 3.6
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 26 4.8
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 26 4.8
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 26 6.3
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 8.4
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 25 8.4
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 467 EYVIPDIFQRFGGSRRNHDSNYITTLII 550
E V P + Q+F S R+HD +Y L++
Sbjct: 368 ELVQPRLIQKFSHSSRSHDKSYTKKLLL 395
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +2
Query: 335 RPHRVA---TPARCHCAACGPGLTKHPKPGHASYSGTKNPVQPERD 463
RPH A P R H G G KH K HA G K+ +PE D
Sbjct: 133 RPHDSADEDAPRRKHGKCKGKG--KHHKGKHAKGKGKKSHPKPEDD 176
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +3
Query: 279 RPRSTAACPCDSRAKTGRSDRTGSPRRRAATVPPADPDSLSTLNLVTHPTLVP 437
RP A+ P D R+K S + A TV +P+S + P L P
Sbjct: 595 RPTPNASSPLDVRSKQKPSSANSNAPTPAPTVNTTNPESSTNEATSVGPALEP 647
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 482 DIFQRFGGSRRNHDSNYITTLIINF 556
DIFQ NHD NY + I F
Sbjct: 489 DIFQSGSSHDENHDDNYFINIFIIF 513
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 538 RDVIRVVVSPASPEALEYIRDHVLPVPLRLYWVLG 434
+D+IR + P+ E+ ++IRD +LP L L +G
Sbjct: 205 KDIIRESLIPSIMESRQWIRDLLLPSRLGLLLDIG 239
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +3
Query: 153 GAHGLCVNKFPITG-FTECHGSCDSGTIYNNQTGTTSLRASVVRPRSTAACP 305
G G+C + G + H GT++ T ++ +++V+P P
Sbjct: 208 GLRGVCYFNITVEGPSADLHSGVFGGTVHEPMTDLVAIMSTLVKPNGEILIP 259
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 8.4
Identities = 21/86 (24%), Positives = 37/86 (43%)
Frame = +3
Query: 189 TGFTECHGSCDSGTIYNNQTGTTSLRASVVRPRSTAACPCDSRAKTGRSDRTGSPRRRAA 368
TG+T ++ T+ TGT++ +VV T ++ T + TG+
Sbjct: 846 TGYT----GTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGT-ETSTV 900
Query: 369 TVPPADPDSLSTLNLVTHPTLVPRTQ 446
TV P + +T ++ PT V T+
Sbjct: 901 TVTPTGTSTGTTTVVIQTPTTVTATE 926
Score = 25.4 bits (53), Expect = 8.4
Identities = 21/86 (24%), Positives = 37/86 (43%)
Frame = +3
Query: 189 TGFTECHGSCDSGTIYNNQTGTTSLRASVVRPRSTAACPCDSRAKTGRSDRTGSPRRRAA 368
TG+T ++ T+ TGT++ +VV T ++ T + TG+
Sbjct: 890 TGYT----GTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGT-ETSTV 944
Query: 369 TVPPADPDSLSTLNLVTHPTLVPRTQ 446
TV P + +T ++ PT V T+
Sbjct: 945 TVTPTGTSTGTTTVVIQTPTTVTATE 970
Score = 25.4 bits (53), Expect = 8.4
Identities = 21/86 (24%), Positives = 37/86 (43%)
Frame = +3
Query: 189 TGFTECHGSCDSGTIYNNQTGTTSLRASVVRPRSTAACPCDSRAKTGRSDRTGSPRRRAA 368
TG+T ++ T+ TGT++ +VV T ++ T + TG+
Sbjct: 934 TGYT----GTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGT-ETSTV 988
Query: 369 TVPPADPDSLSTLNLVTHPTLVPRTQ 446
TV P + +T ++ PT V T+
Sbjct: 989 TVTPTGTSTGTTTVVIQTPTTVTATE 1014
Score = 25.4 bits (53), Expect = 8.4
Identities = 21/86 (24%), Positives = 37/86 (43%)
Frame = +3
Query: 189 TGFTECHGSCDSGTIYNNQTGTTSLRASVVRPRSTAACPCDSRAKTGRSDRTGSPRRRAA 368
TG+T ++ T+ TGT++ +VV T ++ T + TG+
Sbjct: 978 TGYT----GTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGT-ETSTV 1032
Query: 369 TVPPADPDSLSTLNLVTHPTLVPRTQ 446
TV P + +T ++ PT V T+
Sbjct: 1033 TVTPTGTSTGTTTVVIQTPTTVTATE 1058
Score = 25.4 bits (53), Expect = 8.4
Identities = 21/86 (24%), Positives = 37/86 (43%)
Frame = +3
Query: 189 TGFTECHGSCDSGTIYNNQTGTTSLRASVVRPRSTAACPCDSRAKTGRSDRTGSPRRRAA 368
TG+T ++ T+ TGT++ +VV T ++ T + TG+
Sbjct: 1022 TGYT----GTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGT-ETSTV 1076
Query: 369 TVPPADPDSLSTLNLVTHPTLVPRTQ 446
TV P + +T ++ PT V T+
Sbjct: 1077 TVTPTGTSTGTTTVVIQTPTTVTATE 1102
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +2
Query: 443 PVQPERDREYVIPDIFQRFGGSRRNHDSNYI 535
P+Q E + PD F + + + HD +I
Sbjct: 270 PIQSEGGDNHASPDFFHKLQATLKKHDVKFI 300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,870,858
Number of Sequences: 5004
Number of extensions: 59359
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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