Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00797
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0414 + 16885168-16885301,16885411-16885589,16886351-168863... 36 0.025
09_06_0096 - 20840855-20841994 31 0.71
03_05_1131 - 30606808-30607042,30607141-30607664 31 0.94
02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419... 30 1.6
07_01_0282 - 2070027-2070041,2074763-2075062,2075154-2075722,207... 30 2.2
12_01_0965 + 9688062-9688532 29 2.9
04_04_1584 + 34601927-34602144,34603324-34603510,34604239-346044... 29 2.9
04_03_0173 + 12248973-12249809 29 3.8
04_04_0878 + 29039110-29039366,29039634-29039822,29039907-290400... 29 5.0
03_06_0297 - 32924162-32924605 29 5.0
01_05_0485 - 22628999-22629325,22630340-22630450,22630888-226310... 29 5.0
08_02_0610 + 19307537-19308011,19308187-19310846 28 6.6
07_03_1257 - 25241194-25242018 28 6.6
03_05_0783 - 27662178-27662237,27662659-27662700,27662791-276628... 28 6.6
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 28 8.7
05_07_0056 + 27382708-27383871,27384450-27384818 28 8.7
05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033 28 8.7
02_04_0166 - 20508656-20509092,20509282-20509372 28 8.7
>08_02_0414 +
16885168-16885301,16885411-16885589,16886351-16886389,
16886565-16886593,16886778-16886840,16888188-16888291,
16888409-16888919
Length = 352
Score = 36.3 bits (80), Expect = 0.025
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Frame = +2
Query: 197 HGVPRLLRLWNYL*QPD-----RYDESACECCQAAKYSGVSVRLTCED--GTVRPHRVAT 355
HGV R + LW L D RY E A AA+ GVSV++ + G P + T
Sbjct: 165 HGVQRGINLWINLSSKDKMVEPRYQELASHDIPAAERDGVSVKVIAGEALGARSPLQTRT 224
Query: 356 PARCHCAACGPG 391
PA C A PG
Sbjct: 225 PALCLDVAMRPG 236
>09_06_0096 - 20840855-20841994
Length = 379
Score = 31.5 bits (68), Expect = 0.71
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 113 PELRHCRSDPHPDGSPRPVRQQVPHH 190
P +R R PHPDG+P P VPHH
Sbjct: 306 PVVRRRRPTPHPDGAPPP----VPHH 327
>03_05_1131 - 30606808-30607042,30607141-30607664
Length = 252
Score = 31.1 bits (67), Expect = 0.94
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +2
Query: 68 QRETASPQ*MRP*EHPELRHCRSDPHPDGSPRPVRQQVPHHRLHGVPRLL 217
+R A+ P H R S P P +PRPVR V + ++G RLL
Sbjct: 11 KRHRAAAAAAAPASHSHQRERTSIPAPAAAPRPVRIYVVFYSMYGHVRLL 60
>02_03_0381 -
18339290-18339994,18340083-18340103,18341925-18341982,
18342084-18342220,18342480-18342650
Length = 363
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -1
Query: 220 SQEPWHSVKPVMGNLLTHR----PWAPIGMRIRPTVSELGML 107
+ +PW ++P++GN++ R W P +R + S+ G +
Sbjct: 299 TDDPWRDLQPIVGNIMIPRDGSKSWLPESLRAKKDTSDRGQV 340
>07_01_0282 -
2070027-2070041,2074763-2075062,2075154-2075722,
2075812-2076337
Length = 469
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 188 HRLHGVPRLLRLWNYL*QPDRYDESACECCQAAKYSGVSVRL 313
H LH P+++ W Y+ D Y + C+C A Y+ + ++
Sbjct: 307 HCLHD-PKIVLCWRYMYGGDDYCDLGCDCFDAHSYNDLQSKI 347
>12_01_0965 + 9688062-9688532
Length = 156
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = -3
Query: 503 PRSAGIYPGSRT-PCPAPAVLGSWY 432
P GIYP T PC P V G WY
Sbjct: 132 PSICGIYPSYNTAPCSIPTVGGIWY 156
>04_04_1584 +
34601927-34602144,34603324-34603510,34604239-34604496,
34604866-34604965,34608523-34608639,34608704-34608804,
34609035-34610141
Length = 695
Score = 29.5 bits (63), Expect = 2.9
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 162 GLCVNK-FPITGFTECHGSCDSGTIYNNQTGTTSLRASVVRPRSTAACPCDSRAKTGRSD 338
GLC K FP++ F G +N +G+ + SVV+P+ST++ P + +
Sbjct: 426 GLCQPKRFPLSLFVPSTG-------VDNDSGSLFIMESVVKPKSTSSGPRSDQFE-AFVY 477
Query: 339 RTGSPRRRAAT 371
RT SPRR ++
Sbjct: 478 RTPSPRRHLSS 488
>04_03_0173 + 12248973-12249809
Length = 278
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -3
Query: 245 LVVIDSSRVAGAVALREAGDGELVDAQAVGSHRDADQTYSV*ARDAL 105
++V+D + +L EA GE+V Q + + D + YS+ A+ AL
Sbjct: 65 VLVVDDAAAGAITSLPEATQGEVVALQVLLDYYDPVKLYSLKAKTAL 111
>04_04_0878 +
29039110-29039366,29039634-29039822,29039907-29040044,
29040786-29041011,29041686-29041878,29041963-29042123
Length = 387
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 368 HCAACGPGLTKHPKPGHASYSG 433
HC ACG GL KHP+ G SG
Sbjct: 358 HCYACGDGL-KHPEDGTLYESG 378
>03_06_0297 - 32924162-32924605
Length = 147
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = -2
Query: 402 CLVSPGPQAAQWQRAGVATRCGRTVPSSHVSRTDTPL 292
CL P AA +RA V RCG T P + V TD L
Sbjct: 23 CLHRPQVGAAAARRAAVGVRCGGT-PPAEVPGTDRSL 58
>01_05_0485 -
22628999-22629325,22630340-22630450,22630888-22631034,
22631283-22631337,22631761-22632134,22632926-22633000,
22633419-22633670
Length = 446
Score = 28.7 bits (61), Expect = 5.0
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Frame = +2
Query: 146 PDGSPRPVRQQVPHHRLHGVPRLLRLWNYL*QPD-RYDESACECCQAAK--YSGVSVRLT 316
P+ RP R+ V H RL G + + + QP R ++S C C + ++G ++R T
Sbjct: 11 PERRRRP-RRDVDHQRLAGDGGVAVVHRQVLQPRARAEDSWCRCRIGLQRAWAGCNLRNT 69
Query: 317 CEDGTVRPHRVATPARCHCAACGPGLTKHPKPGHASYSGTKNPVQPERDREYVIPDIFQR 496
++ + + C CG ++ GHA P + + +IF
Sbjct: 70 GPKSLLQLINMGRN-QLSCIDCGESFSQETVQGHAQCISGAEKYGPPKGQNKASMEIFPS 128
Query: 497 FGGS 508
G+
Sbjct: 129 CAGN 132
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 282 PRSTAACPCDSRAKTGRSDRTGSPRRR 362
P +T A PC ++ R+D G RRR
Sbjct: 948 PTTTTANPCTCTSRASRTDTAGGARRR 974
>07_03_1257 - 25241194-25242018
Length = 274
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = +3
Query: 222 SGTIYNNQTGT--TSLRASVVRPRSTAA----CPCDSRAKTGRSDRTGSPRRRAATVPPA 383
S I + TG+ TS VVRPR A P S A++ T RRRA PP+
Sbjct: 152 SSRIADVTTGSRGTSTTTPVVRPRLRARLPELAPAASPARSSPPKPTAKTRRRATRTPPS 211
>03_05_0783 -
27662178-27662237,27662659-27662700,27662791-27662892,
27662991-27663147,27663230-27663307,27663391-27663446,
27663557-27663634,27663736-27663867,27663943-27664078,
27664252-27664403,27665317-27665391,27665476-27665535,
27665865-27665944,27666392-27666462,27666549-27666689,
27667467-27667555,27668657-27668731,27669303-27669401,
27669526-27669572,27669654-27669875,27671485-27671557,
27671650-27671823
Length = 732
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 424 LLWYQEPSTAGAGQGVRDPGYIPA 495
L W + P+ GAG G PG +PA
Sbjct: 4 LAWTRLPTADGAGAGAEGPGPVPA 27
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -2
Query: 411 GLGCLVSPGPQAAQWQRAGVAT---RCGRTVPS 322
G GC + P P+ R+GVA R GRTV S
Sbjct: 114 GAGCAIRPRPRCGPRARSGVAAQQWRHGRTVAS 146
>05_07_0056 + 27382708-27383871,27384450-27384818
Length = 510
Score = 27.9 bits (59), Expect = 8.7
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -1
Query: 670 KKYFEHFYIIKCINIL 623
KKYF+H +I+K +N+L
Sbjct: 203 KKYFDHSFIVKLLNLL 218
>05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033
Length = 143
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 403 P*TWSRILLWYQEPSTAGAGQG 468
P TWS+ W++ T+GAG+G
Sbjct: 70 PVTWSKEKTWWKSLGTSGAGKG 91
>02_04_0166 - 20508656-20509092,20509282-20509372
Length = 175
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = -3
Query: 365 SAPAWRPGAVGPSRLRT*VARTRRCTSRPDNTRTQTRRTGLVVIDSSRVAGAVALREAGD 186
S P G V SR+ V R+R +R + R + R G++V + + AVA+R+A
Sbjct: 87 SRPRAPRGRVTYSRVVLAVDRSRTGMARKISVRRRRREHGVLVGSWTSTSAAVAVRDAPG 146
Query: 185 GELVDAQAVGSH 150
+ GSH
Sbjct: 147 RARLTPLLRGSH 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,062,147
Number of Sequences: 37544
Number of extensions: 472678
Number of successful extensions: 1820
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1818
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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