Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00796
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 29 0.67
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.67
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.5
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 27 2.0
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 27 3.6
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 27 3.6
SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein ... 26 6.2
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 8.2
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 25 8.2
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 29.1 bits (62), Expect = 0.67
Identities = 25/94 (26%), Positives = 47/94 (50%)
Frame = +1
Query: 76 VLSASLANTSTGSVELDEISFNKVINKFEASLVKFDVAFPYGDKHDAFVALAKDSKDVDD 255
V AS+ + + + EL+ S N +++ + ++ P G HD + LA+ D+++
Sbjct: 168 VFQASMGDAISTNDELESWSNNLLLSMLDQK----NITVPIGASHDDLIVLARRYYDIEE 223
Query: 256 F**LKSA*RITVKKITRYWQRSTELQKIIFLW*D 357
KS ++T IT Q + +++II LW D
Sbjct: 224 ---RKSQDKVT--NITDS-QPAPYMKEIIHLWSD 251
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.1 bits (62), Expect = 0.67
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = -1
Query: 254 SSTSLESFASATKASCLSPYGN-ATSNFTREASNLFITLLNEISSNSTEPVDVFAREADS 78
SS+S+ S +SAT S S ++S+FT AS+ FIT L +SS+S + A S
Sbjct: 44 SSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSL--VSSSSQQSSSSSASLTSS 101
Query: 77 TAKNTTGT 54
++ T +
Sbjct: 102 SSATLTSS 109
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = -1
Query: 254 SSTSLESFASATKASCLSPYGNATSNFTREASNLFITLLNEISSNSTEPVDVFAREADST 75
+S+SL S +S T +S S N+T++ T +S +L + +SNS + + +ST
Sbjct: 145 TSSSLAS-SSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNST 203
Query: 74 AKNTTGTRKLRS 39
T + L S
Sbjct: 204 TSATATSSSLSS 215
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -2
Query: 499 ASLSKLLTQPGKLRYKPVFSRTNRRSSSVVKPWESSNGIGSFLPLRKSLTTGKLS 335
+SL L P K ++PV R SS +VKP SS+ S L SL + +L+
Sbjct: 429 SSLLTPLALPNKKAFQPVKFRVPSFSSPLVKPASSSSFGRSHSHLGTSLRSNELN 483
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 26.6 bits (56), Expect = 3.6
Identities = 27/88 (30%), Positives = 38/88 (43%)
Frame = -1
Query: 452 AGVFANKSSKFISGETLGVIKWYWIVFTFEEESHHRKIIFCSSVLLCQYLVIFFTVILHA 273
AG+ +K S+ S +L V Y IV F + K F +LL ++F L
Sbjct: 554 AGILESKKSEINSSFSLAV---YVIVDFFSLWTTRHK--FFRFLLLTVQSLVFAIEKLVN 608
Query: 272 DFSYQKSSTSLESFASATKASCLSPYGN 189
FS + +AT S L+PYGN
Sbjct: 609 FFSMANFFLAFYFVCNATSYSSLNPYGN 636
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 285 YGEKDNEVLAKKYGATK 335
YGE DN L +KYG TK
Sbjct: 294 YGELDNSELFRKYGFTK 310
>SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein
Uhp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 303 EVLAKKYGATKDNFPVVRLFLKGKNDPIPFDDSQGFTTD--ELRRFVRENTGLYL 461
E+L K + A K N+PVV L + + D F + T + R F GL++
Sbjct: 48 EILEKMHAAPKPNYPVVTLDVLTQYDAFLFGYPTRYGTPPAQFRTFWDSTGGLWV 102
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 64 VFLAVLSASLANTSTGSVELDEISFNKVINKFEASLVKFDVAFPYGDKH 210
V L LS SL + +D+ISFN +++ +AS + GDKH
Sbjct: 63 VSLKRLSKSLDRSLPSENTIDQISFNHAMSEEDAS------GYQIGDKH 105
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 218 KASCLSPYGNATSNFTREASNL-FITLLNEISSNSTEPVD 102
K + +PY NA NFT S L +I L++ N ++ ++
Sbjct: 484 KTTLNTPYANAVGNFTGLFSGLIYIVLISYFFPNKSDDLN 523
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,184
Number of Sequences: 5004
Number of extensions: 47350
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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