Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00796
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0236 - 1725061-1727070                                           36   0.043
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752...    28   8.6  

>07_01_0236 - 1725061-1727070
          Length = 669

 Score = 35.5 bits (78), Expect = 0.043
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = -1

Query: 245 SLESFASATKASCLSPYGNATSNFTREASNLFITLLNEISSNSTEPVDVFAREADSTAKN 66
           ++ S A    A  L+ + + T NF+R  SN F+ LLN+ ++ +T    +FA E D+   N
Sbjct: 96  AIRSIAPGVSAQGLTFFVSPTKNFSRAFSNQFLGLLNKKNNGNTSN-HIFAVELDTVLNN 154


>12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,
            7526206-7526295,7526404-7526553,7527333-7528094,
            7528177-7528496,7528581-7528707,7528792-7528959,
            7529054-7530466,7530563-7530823,7530983-7531144,
            7531976-7532121,7532601-7532667,7533483-7533587
          Length = 1707

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 306  PRYLFHRNPSRRLQLSKVIHVFRVLREC 223
            P+  +H      L LSK+I +FR+ +EC
Sbjct: 1648 PQTGYHIQTEFELSLSKIILIFRITKEC 1675


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,023,116
Number of Sequences: 37544
Number of extensions: 254190
Number of successful extensions: 677
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)