Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00795
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 122 4e-29
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 122 4e-29
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 39 7e-04
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 28 0.99
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 27 2.3
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 5.3
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 26 5.3
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 25 7.0
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 25 7.0
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 25 9.2
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 122 bits (294), Expect = 4e-29
Identities = 55/94 (58%), Positives = 75/94 (79%)
Frame = -2
Query: 508 KKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGG 329
K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ VDIRV V GG
Sbjct: 10 KGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGG 69
Query: 328 GHVAQVYAIRQAISKALIAFYQKYVTKPQRRKSK 227
GHV+Q+YAIRQAISKA++A+YQK+V + + + K
Sbjct: 70 GHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELK 103
Score = 75.4 bits (177), Expect = 7e-15
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = -1
Query: 254 DEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 117
DE SK E+K L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 95 DEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 122 bits (294), Expect = 4e-29
Identities = 55/94 (58%), Positives = 75/94 (79%)
Frame = -2
Query: 508 KKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGG 329
K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ VDIRV V GG
Sbjct: 10 KGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGG 69
Query: 328 GHVAQVYAIRQAISKALIAFYQKYVTKPQRRKSK 227
GHV+Q+YAIRQAISKA++A+YQK+V + + + K
Sbjct: 70 GHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELK 103
Score = 75.4 bits (177), Expect = 7e-15
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = -1
Query: 254 DEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 117
DE SK E+K L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 95 DEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 38.7 bits (86), Expect = 7e-04
Identities = 25/78 (32%), Positives = 37/78 (47%)
Frame = -2
Query: 508 KKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGG 329
+K++ A G G VNG P D+ R++ K L + + ++ TV GG
Sbjct: 14 RKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVHGG 72
Query: 328 GHVAQVYAIRQAISKALI 275
G Q A+ AISK+LI
Sbjct: 73 GPTGQSGAVHAAISKSLI 90
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 28.3 bits (60), Expect = 0.99
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 448 RLHAAFHDHACNTQLRWRFSSSEYL 522
RLH+ F++H C + L+ FS+ Y+
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFSTDTYV 1086
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 136 DTRNLTVKPSTKPSGGIVAAVCCH 65
D N+ VKP+ P+ + +CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 440 WTPVYTQHSMTTLAIRNCGGGFLRPNTWTAWMGSRLASC 556
WT VY+Q T ++ F PN W G+ + SC
Sbjct: 1234 WTGVYSQSLYTYEFYKSASRIFRTPNFWAVLCGT-IVSC 1271
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 539 SPSRPSKYSDEENRHRS 489
+PSR S+Y D++ HRS
Sbjct: 182 APSRASRYDDDDRDHRS 198
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -1
Query: 326 SCSTSLRYQTSYFEGSDRLLPEICDEASKKEIKDILVQYDRSLL 195
+C+T S E SD++ + + E++D + +YD +L
Sbjct: 234 ACTTDANIDNSIPENSDKIEEVSIESSGPSEVEDEMSEYDVRVL 277
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 546 LPPAQQH*RAFDSTR 590
LPPAQ H RAFD +
Sbjct: 215 LPPAQDHKRAFDGDK 229
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 296 LSDSVNLCYMTTTLDCHSDV-DHREFFLAEQ 385
LS+ N CYM + L C + + R+FF +++
Sbjct: 313 LSNLGNTCYMNSALQCLTHTRELRDFFTSDE 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,601
Number of Sequences: 5004
Number of extensions: 49348
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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