Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00793
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 27 2.3
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 27 2.3
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 27 4.0
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 5.4
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 5.4
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 5.4
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 5.4
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 9.4
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 25 9.4
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 9.4
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = +3
Query: 234 GKTNYGREDLSMDNAMDTMKFLDEISGRSGAGARVEGEDDKRALPPIVSEKPADSLKKKT 413
G ++ L + + +F D+ G + V+ EDDK ++ E+ S K
Sbjct: 110 GNDKDSQDSLKLHYKPNLSEFADDSDGPASENNVVK-EDDKSSISSEDEEEELRSAKDGI 168
Query: 414 KRPPMLTGVTSAETSR 461
RPP + VT R
Sbjct: 169 YRPPRIRAVTMDSEKR 184
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 303 EISGRSGAGARVEGEDDKRALPPIVSEKPADSLKKKTKRPP 425
+I+ +G GA E ++ K P S ADS K +T PP
Sbjct: 195 DINMNAGEGA-AEEQEKKEEFAPSSSTPSADSAKPETTNPP 234
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 517 VLNACNWLVRNLLYF--PKTALDVSAEVTPVNIGGLFVFFFKESAGFS 380
+ C W +L + P+ AL + A P+ IGGL+ F GF+
Sbjct: 71 LFTVCGWAGGPILKYLGPRWALALGATGYPIYIGGLWYFDNTGKQGFT 118
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 571 WSTAYNGSGRIYTSYIIDGLLWI 639
+ T Y S R +T +++ GL+WI
Sbjct: 573 YGTGYIFSKRFFTGWVVVGLIWI 595
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 9 SCCNGPRFGWERCITFSNVSGRTYR 83
+C N PRF +E C T N S + R
Sbjct: 1482 TCNNDPRFAYEICKTLDNDSDKFVR 1506
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 330 ARVEGEDDKRALPP-IVSEKPADSLKKKT 413
A +GED++ LPP +V K SL K T
Sbjct: 992 AETKGEDEEALLPPEVVQRKVKGSLNKMT 1020
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 379 DTIGGKARLSSSPSTRAPAPERPDISSKNFIVSIALS 269
DT+G R SS+ + +PA P + IVS +S
Sbjct: 306 DTLGSSTRPSSADTAGSPATSPPATADSKTIVSKTIS 342
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 198 RESY*VPSTGTRGKTNYGREDLSMDNAMDTMK 293
++S V S G + K +EDLSMD + D +K
Sbjct: 16 KKSKNVASHGEKRKVKRKKEDLSMDGSNDGVK 47
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 184 PKRPAESLIKCLRQVPVEKL-IMAEKT*AWIT 276
P P + ++ C+R P+E I+ EK A+I+
Sbjct: 124 PNTPIDEILSCVRTGPIESAWILPEKNCAFIS 155
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 345 EDDKRALPPIVSEKPADSLKKKTKRPPMLTGVTSAETS 458
E+D ALPP S++ + L KK RP G T +S
Sbjct: 670 EEDFPALPPSTSKRISVQLGKKQARPVDSWGSTPNTSS 707
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,199,112
Number of Sequences: 5004
Number of extensions: 63525
Number of successful extensions: 196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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