Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00793
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508... 31 0.79
01_02_0070 - 10817675-10818024,10818228-10818893,10819094-108191... 31 1.0
08_02_0912 - 22536181-22537011 31 1.4
05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284... 29 3.2
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 29 5.6
12_02_0440 - 19109807-19110132,19110219-19110291,19110444-191105... 29 5.6
05_01_0366 - 2867953-2868252,2868329-2868469,2868808-2869089,286... 29 5.6
03_06_0519 - 34481751-34482722 29 5.6
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 28 7.4
03_04_0029 - 16610182-16611753 28 7.4
02_04_0614 - 24400284-24400568,24400669-24400932,24401040-244011... 28 7.4
01_06_1313 - 36212524-36213669 28 7.4
>03_06_0412 +
33749039-33749077,33749585-33749728,33750110-33750862,
33750959-33751778,33751893-33752140,33752285-33752391,
33753098-33753248,33753339-33753530,33753905-33754042
Length = 863
Score = 31.5 bits (68), Expect = 0.79
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 765 DSGTPCAPLANTLVRRKVEQSITVASTIGDRP 670
++G C P++N L+RR+ S+ STI RP
Sbjct: 448 EAGPSCTPVSNILLRRRKYSSLRPFSTIAPRP 479
>01_02_0070 -
10817675-10818024,10818228-10818893,10819094-10819124,
10820038-10820164,10820279-10820736
Length = 543
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +3
Query: 312 GRSGAGARVEGEDDKRALPPIVSEKPADSLKKKTKRPPMLTGVTSAETSR 461
G G GA G LPP+ S A + +R P+ G A SR
Sbjct: 104 GCGGGGAAASGASSLLPLPPVRSSCSASHISPNPRRSPLFPGGNHAAASR 153
>08_02_0912 - 22536181-22537011
Length = 276
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +3
Query: 252 REDLSMDNAMDTMKFLDEISGRSGAGARVEGEDDKRALPPIVSEKPADSLKKKTKRPP 425
+E + D + + G +G A E + + PP+V++ P S K+K PP
Sbjct: 90 KETAPAEQVPDAPRPSKKARGENGKAAAAENVEVQTPPPPLVADAPRHSKKRKAPPPP 147
>05_07_0228 -
28526885-28527046,28527151-28527241,28528315-28528455,
28528560-28528625,28529180-28529317,28529759-28529860,
28530156-28530236,28530314-28530383,28530598-28530674,
28531035-28531483
Length = 458
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = -2
Query: 161 VSACLAGSGLTAPGDRGAPDNAATPVAVRPSADI 60
VSA L +GL AP P NAATP P A I
Sbjct: 29 VSAPLPSNGLHAPSISTHPTNAATPNPSPPGASI 62
>12_02_0953 -
24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +3
Query: 312 GRSGAGARVEGEDDKRALPPIVS-EKPADSLKKKTKRPPMLTGVTSA 449
G+S A A EG P S KPA S+ RPPM +G A
Sbjct: 139 GKSSAAAASEGGGGSTQSTPTKSVTKPAYSIGMSASRPPMSSGQRGA 185
>12_02_0440 -
19109807-19110132,19110219-19110291,19110444-19110586,
19110787-19111002,19111072-19111387,19111474-19111884,
19113979-19114005
Length = 503
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +3
Query: 240 TNYGREDLSMDNAMDTMKFLDEISGRSGAGARVEGEDDKRALPPIVSEKPADSLKKKTKR 419
T G +DL M+N D + D I+ + V + ++R S KP + ++K +
Sbjct: 426 TQVGADDLLMENNQDDLNNDDPITASEQSKVEVSNQLNQRRQTVSTSRKPPEDKREKNPK 485
>05_01_0366 -
2867953-2868252,2868329-2868469,2868808-2869089,
2869177-2869569,2869796-2869975,2870149-2871510
Length = 885
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/54 (38%), Positives = 24/54 (44%)
Frame = -2
Query: 194 GLFGHPVRSAMVSACLAGSGLTAPGDRGAPDNAATPVAVRPSADIAKSDAALPP 33
GL P S +A L L GD A AAT + S D+A AALPP
Sbjct: 60 GLALSPPESRAAAAVLLNKLLVTAGDSSALVTAATATGLAGSLDLA---AALPP 110
>03_06_0519 - 34481751-34482722
Length = 323
Score = 28.7 bits (61), Expect = 5.6
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Frame = -2
Query: 242 SFSTGTCRRHLIRLSAGLFGHPVRS------AMVSACLAGSGLTAPGDRGAPDNAATPVA 81
S ST T R RL+ HP + A S+ LAG+ PG A +++P A
Sbjct: 36 SSSTPTTARRSKRLAGAPPDHPAEAGPSSTNARRSSRLAGAPPATPGAAAAAPTSSSPTA 95
Query: 80 VRPSADIAKSDAALPPEP 27
R S + A PP+P
Sbjct: 96 ARRSNRL----AGAPPDP 109
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 143 GSGLTAPGDRGAPDNAATPVAVRPSADIAKSDAALPPEPWPITTT 9
GS +AP AP N A P P+A +++ A P P+T +
Sbjct: 79 GSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVA-PATTVPVTVS 122
>03_04_0029 - 16610182-16611753
Length = 523
Score = 28.3 bits (60), Expect = 7.4
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = -3
Query: 511 NACNWLVRNLLYFPKTALDVSAEVTPVNIGGLFVFFFKESAGFSDTIGGK-ARLSSSPST 335
N +W ++ +D++ GG ++ A D IG A+ S PST
Sbjct: 12 NGLDWFEESMSSLLAADVDLAGGGGDAGGGGYAWWWAASPAAQQDDIGSVVAQTLSPPST 71
Query: 334 RAPAPERPDISS 299
APA P I+S
Sbjct: 72 AAPAAASPSIAS 83
>02_04_0614 -
24400284-24400568,24400669-24400932,24401040-24401134,
24401173-24401253,24401544-24402066
Length = 415
Score = 28.3 bits (60), Expect = 7.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 468 FGKYNKFLTNQLQALRTSLKKTWSVV 545
+GK +K L L ++ ++K TWS++
Sbjct: 385 YGKSSKILARNLDGIQMAMKSTWSIM 410
>01_06_1313 - 36212524-36213669
Length = 381
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 91 VAALSGAPLSPGAVRPEPAKHADTI-AERTG 180
VA+ S P SP VRP PA+ D++ +R+G
Sbjct: 65 VASDSSFPESPSGVRPPPARERDSVDDDRSG 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,433,094
Number of Sequences: 37544
Number of extensions: 440221
Number of successful extensions: 1647
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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