Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00793
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39743-4|AAA80438.4|  581|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z47070-1|CAA87340.1|  516|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protei...    28   6.6  
AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen prot...    28   6.6  
Z78018-3|CAB01444.1|  820|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    28   8.8  
AF045642-7|AAC02583.1|  592|Caenorhabditis elegans Hypothetical ...    28   8.8  

>U39743-4|AAA80438.4|  581|Caenorhabditis elegans Hypothetical
           protein R173.3 protein.
          Length = 581

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +1

Query: 91  VAALSGAPLSPGAVRPEPAKHADTIAERTGCPKRPAESLIKCLRQVPVEKLIMAEK 258
           V  +SG+ L PG VR         + +R GC    +  L+ C R+   E++   ++
Sbjct: 241 VLLMSGSALQPGVVRNTQVNATWNMNDRFGCRAFNSSELLDCARKRSKEEIFQYKR 296


>Z47070-1|CAA87340.1|  516|Caenorhabditis elegans Hypothetical
           protein T09B9.2 protein.
          Length = 516

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +3

Query: 426 MLTGVTSAETSRAVFGKYNKFLTNQLQALRTSLKKTWSVVYKV 554
           ++TG+  A  S   F  +NK L +Q+  LRT  K  W++V+++
Sbjct: 411 IITGLAFAVAS--CFSIFNKLLISQI--LRTGSKHEWTIVFEI 449


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
           protein C46C2.1b protein.
          Length = 1677

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 107 PDNAATPVAVRPSADIAKSDAALPPEPWPITTT 9
           P + A+P     + D+A + A + P P P TTT
Sbjct: 889 PASIASPSPAPSATDVASTTAPVTPAPTPTTTT 921


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
           protein C46C2.1a protein.
          Length = 1838

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 107 PDNAATPVAVRPSADIAKSDAALPPEPWPITTT 9
           P + A+P     + D+A + A + P P P TTT
Sbjct: 889 PASIASPSPAPSATDVASTTAPVTPAPTPTTTT 921


>U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protein
           43 protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 140 SGLTAPGDRGAPDNAATPVAVRPSADIAKSDAALPPEPWP 21
           SG  APG+R A  +      V PSA++      LP  P P
Sbjct: 72  SGPAAPGNRTARQSGYGQPEVNPSANLQCEGCCLPGPPGP 111


>AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen
           protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 140 SGLTAPGDRGAPDNAATPVAVRPSADIAKSDAALPPEPWP 21
           SG  APG+R A  +      V PSA++      LP  P P
Sbjct: 72  SGPAAPGNRTARQSGYGQPEVNPSANLQCEGCCLPGPPGP 111


>Z78018-3|CAB01444.1|  820|Caenorhabditis elegans Hypothetical
           protein W07G4.3 protein.
          Length = 820

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 125 PGDRGAPDNAATPVAVRPSADIAKSDAALPPEP 27
           PG     D ++ PV   P+A+  KS   L P P
Sbjct: 555 PGAPATADTSSRPVTPNPTAEKEKSSTVLKPTP 587


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 336 VEGEDDKRALPPIVSEKPADSLKKKTKRPP 425
           VEGE  +   P   ++KP  +    TKRPP
Sbjct: 367 VEGEKKETKKPKSTTKKPTKTAAASTKRPP 396


>AF045642-7|AAC02583.1|  592|Caenorhabditis elegans Hypothetical
           protein C17H12.4 protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 369 PIVSEKPADSLKKKTKRPPMLTGVTSAE 452
           P++ E P     K  K+ PMLTG T  E
Sbjct: 318 PLIQEIPYQEFMKSPKKIPMLTGCTRYE 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,775,405
Number of Sequences: 27780
Number of extensions: 371209
Number of successful extensions: 1189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)