Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00791-2
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   0.68 
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    27   1.2  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    25   2.7  
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    25   3.6  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   3.6  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    24   6.3  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    24   6.3  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    24   8.3  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    24   8.3  

>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 27.5 bits (58), Expect = 0.68
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 28   EDQLYFMTKTKGKPTRQSDADRNERRRNAIRELQNKTDIIQKIADL-FRHLQAEIIAE 198
            +DQLY +  TK K       +     ++  +EL+NK +  Q ++D   ++++ + I E
Sbjct: 1101 KDQLYQLQATKNKELEAKVKECLNNIKSLTKELENKEEKCQNLSDASLKYIELQEIHE 1158


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 213 IRRARFSYDFRL*MSE*ISNFLNYIRFVLKFSDGVPSTLIPV 88
           IR+   SYDF + + E I NF+N    VL  +D V S+L  +
Sbjct: 389 IRKLADSYDFAVVVDETIGNFVNV--EVLPLADVVVSSLTKI 428


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 9/24 (37%), Positives = 20/24 (83%)
 Frame = +2

Query: 65  NRLVNQMPTGMSVEGTPSENFKTK 136
           +RL+N + + +S++GT S+N+++K
Sbjct: 294 SRLLNLVHSQISLQGTSSDNYQSK 317


>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 4   EEFVATYIEDQLYFMTKTKGKPTRQSDADRNERRRNAIRELQNKTDIIQKIADLFRHL 177
           +E+ A   E Q Y      GK     + + NER +    E QN   ++ K+  L +HL
Sbjct: 117 DEWKARLSELQQYREKFLVGKRKCDCNDEINERLKKLTEEQQNVDMLVAKVNFLSKHL 174


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 163  DQQFSE-LYPFCFEVL*WRSFDAHSGRHLIDESVYLW 56
            + +FSE  Y   F+ L W+S D      L+   +Y+W
Sbjct: 1111 NHEFSESCYKRHFDRLIWQSLDTTPDNKLLKNILYIW 1147


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 162 ISNFLNYIRFVLKFSDGVPSTLI 94
           I NF NYI F L  +D VP+  I
Sbjct: 125 IQNFWNYICFELLANDTVPANPI 147


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 13   VATYIEDQLYFMTKTKGKPTRQSDADRNERRRNAIRELQNKTDIIQK 153
            +A  I D L   +K  GKP +        R+R     L  +TD++++
Sbjct: 977  IAAVIRDTLTIDSKMDGKPYKVGKFAHTLRKRLMREHLGLETDVLEQ 1023


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 296 EADSQTIFRLDKDGNYKMKESP 361
           +A   T+ +L K G++K+KE+P
Sbjct: 127 QAHEPTLQKLAKFGSFKLKETP 148


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 163 LFRHLQAEIIAETSAPNIISPYFRDIF 243
           L RH  A ++A  +   I  PYF   F
Sbjct: 18  LLRHCAARLVAFVNNTTISKPYFSTFF 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,499,386
Number of Sequences: 5004
Number of extensions: 28311
Number of successful extensions: 79
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)