Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00791-2
         (363 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0213 - 2692253-2694562                                           28   2.0  
08_02_1153 + 24724469-24724811,24724910-24725021,24725661-247258...    28   2.6  
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785...    27   3.4  
10_08_0728 - 20141785-20142014,20142839-20142923,20143031-201431...    26   7.9  
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302...    26   7.9  
06_01_0541 - 3874476-3874694,3874816-3874868,3875944-3876055,387...    26   7.9  
06_01_0531 - 3836420-3836638,3836760-3836812,3837888-3837999,383...    26   7.9  
04_01_0216 - 2739742-2740381,2742346-2742883,2745014-2745911           26   7.9  

>04_01_0213 - 2692253-2694562
          Length = 769

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -3

Query: 187 FPLVNV*IDQQFSELYPFCFEVL*WRSFDAHSGRHLIDESVYLWFWS*NTTGLQ 26
           + +V++ +   +  LY     V  W  +      H I  +++L FWS +  GLQ
Sbjct: 253 YDVVDMELSLMYDILYTKAAMVHTWGGYAIRFSSHFITSAMFLLFWSQSKEGLQ 306


>08_02_1153 +
           24724469-24724811,24724910-24725021,24725661-24725837,
           24726046-24726172,24726295-24726408
          Length = 290

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 66  TDSSIRCRPE*ASKERHQRTSKQNGYNSE 152
           T S +RC P    K++H+R S + G+ S+
Sbjct: 8   TGSGLRCSPNPMPKQQHERRSARVGFVSQ 36


>06_03_0924 -
           25976629-25976979,25977471-25978424,25978512-25978565,
           25979135-25979254,25979357-25979532,25979624-25980107,
           25980541-25980744,25981671-25981877,25982179-25982271,
           25982433-25982621,25983364-25983423,25983591-25983927,
           25984195-25984432,25984614-25984816,25985549-25986554,
           25987125-25987290,25987715-25987824,25987944-25988195,
           25988360-25988402,25988488-25988550,25989512-25989624,
           25990787-25990838
          Length = 1824

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +1

Query: 64  KPTRQSDADRNERRRNAIRELQNKTDIIQKIADLF 168
           +P R++  DR++R  N   ++ N TDI+++  ++F
Sbjct: 250 EPVRKAKMDRHKRPVNKELQITNFTDIVEEDEEVF 284


>10_08_0728 -
           20141785-20142014,20142839-20142923,20143031-20143148,
           20143163-20143163,20143229-20143751
          Length = 318

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 73  RQSDADRNERRRNAIRELQNKTDIIQ 150
           RQS A   ERR   I EL+ K  I+Q
Sbjct: 175 RQSAARSKERRMRYIAELEQKVQILQ 200


>09_04_0512 +
           18226981-18227143,18227648-18229555,18229649-18230295,
           18230710-18231949,18232085-18232419,18232500-18232577,
           18232872-18232978,18233020-18233062
          Length = 1506

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 52  KTKGKPTRQSDADRNERRRNAIRELQNKTDIIQKIADL 165
           KT   P R + A  +    N+  +LQN  D+++  A L
Sbjct: 852 KTSSSPERYNKASLDNENGNSPGQLQNTLDVVKTTAAL 889


>06_01_0541 -
           3874476-3874694,3874816-3874868,3875944-3876055,
           3876143-3876321,3876358-3877195
          Length = 466

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = +1

Query: 139 DIIQKIADLFRHLQAEIIAETSAPNIISPYFRDIFSA-----VYIITNTDACPCQAMRS* 303
           D +++   LFR+      A ++A    SP F D+F A         T  DA P  A+R  
Sbjct: 78  DDVRRSLHLFRNPHPSSGATSAAAANPSPSFADVFRARPAPPTSRATGADAFPFSALRES 137

Query: 304 QSNNIST 324
            + N+ T
Sbjct: 138 LNKNLGT 144


>06_01_0531 -
           3836420-3836638,3836760-3836812,3837888-3837999,
           3838087-3838265,3838302-3839139
          Length = 466

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = +1

Query: 139 DIIQKIADLFRHLQAEIIAETSAPNIISPYFRDIFSA-----VYIITNTDACPCQAMRS* 303
           D +++   LFR+      A ++A    SP F D+F A         T  DA P  A+R  
Sbjct: 78  DDVRRSLHLFRNPHPSSGATSAAAANPSPSFADVFRARPAPPTSRATGADAFPFSALRES 137

Query: 304 QSNNIST 324
            + N+ T
Sbjct: 138 LNKNLGT 144


>04_01_0216 - 2739742-2740381,2742346-2742883,2745014-2745911
          Length = 691

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = -2

Query: 305 CQLLMAWHGHASVFVIMYTAENISRK*GEIIL-GALVSAMI 186
           CQ+L +W  ++S+ +I     NI+R   E+I+ GALV A++
Sbjct: 283 CQIL-SWSFNSSLPLIHQDTHNIARLLVELIIGGALVFALV 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,266,572
Number of Sequences: 37544
Number of extensions: 166486
Number of successful extensions: 311
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)