Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00789
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0057 - 483710-484309                                             31   0.86 
02_04_0297 + 21709873-21711375                                         30   1.5  
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362...    29   2.6  
09_04_0278 + 16333261-16334172,16334900-16335532                       28   6.0  
01_06_1187 + 35232252-35232976,35233078-35233134,35233323-35233692     28   6.0  
11_01_0349 - 2614682-2614721,2614881-2614955,2615346-2615538,261...    28   8.0  
06_03_0663 + 23248869-23250371                                         28   8.0  

>06_01_0057 - 483710-484309
          Length = 199

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 584 DVTWRVRTSRRSCAQTFLGTKWWYEHVRGAEV*ARD 477
           D TWR R S  S +Q+++ TK W  +VR   + A D
Sbjct: 87  DSTWRFRYSYWSSSQSYVITKGWSRYVRDKRLAAGD 122


>02_04_0297 + 21709873-21711375
          Length = 500

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 465 YIESIPSLDLRPAHVLIPPFGS*KRLC 545
           ++E  P LD R   V   PFGS +RLC
Sbjct: 416 FVERTPQLDFRGKDVEFMPFGSGRRLC 442


>07_03_0562 +
           19535801-19535865,19535972-19536017,19536125-19536223,
           19536588-19536674,19537545-19537613,19537702-19538710,
           19539217-19539365,19539453-19540487,19540488-19541003
          Length = 1024

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 662 LPRPSNRNALLLHGRSRQGGGTYNTTD 582
           +P+P N N  + HG  R G G Y TTD
Sbjct: 782 VPQPRNENTWVYHG--RPGDGKYGTTD 806


>09_04_0278 + 16333261-16334172,16334900-16335532
          Length = 514

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
 Frame = -3

Query: 599 TYNTTDVTWRV-----RTSRRSCAQTFLGTKWW--YEHVRGAEV 489
           TYN +D+TW       R +R+ C       K    YE++RG EV
Sbjct: 112 TYNYSDITWSPYGAYWRQARKMCLTELFSAKRLESYEYIRGEEV 155


>01_06_1187 + 35232252-35232976,35233078-35233134,35233323-35233692
          Length = 383

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 515 TTIWFLKTFVRSFCAKFGLAKLRRSYCRYHHPAYFCR 625
           T  W  ++FVR   A   LA +RR +  + H A +CR
Sbjct: 192 TRQWEERSFVREGEAAGSLAIIRRDFPNFLHNAVYCR 228


>11_01_0349 -
           2614682-2614721,2614881-2614955,2615346-2615538,
           2615654-2616287
          Length = 313

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -3

Query: 575 WRVRTSRRSCAQTFLGTKWWYEHVRGAEV*ARD*LYVNTIVPLFNQISQSIFIG 414
           WR R S  + +Q+++ TK W  +V+   + A D ++   +   F  +   +FIG
Sbjct: 88  WRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFG-VGDRLFIG 140


>06_03_0663 + 23248869-23250371
          Length = 500

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 465 YIESIPSLDLRPAHVLIPPFGS*KRLC 545
           ++E  P LD R       PFGS +RLC
Sbjct: 416 FVERAPLLDFRGKDAEFMPFGSGRRLC 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,811,151
Number of Sequences: 37544
Number of extensions: 281156
Number of successful extensions: 575
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)