Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00789
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024498-8|AAF39807.3|  305|Caenorhabditis elegans Serpentine re...    28   5.4  
AF040659-4|AAK39394.1|  815|Caenorhabditis elegans Half transpor...    27   9.5  

>AF024498-8|AAF39807.3|  305|Caenorhabditis elegans Serpentine
           receptor, class x protein105 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -2

Query: 366 FTNILNVVVSKRDFIFNKKKKLIT 295
           FTNILN++++ + FI +K  KL++
Sbjct: 182 FTNILNILIAIKLFILSKYSKLLS 205


>AF040659-4|AAK39394.1|  815|Caenorhabditis elegans Half transporter
           (pgp related)protein 9, isoform a protein.
          Length = 815

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 617 SRQGGGTYNTTDVTWRVRTSRRSCAQTFLGTKW 519
           +R+GG   +T     R+R+  +S +Q+FLGT +
Sbjct: 778 AREGGSGRSTRAGARRIRSPSQSVSQSFLGTSF 810


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,298,112
Number of Sequences: 27780
Number of extensions: 268145
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)