Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00788
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual           91   2e-19
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   1.7  
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar...    25   6.7  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   6.7  
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    25   6.7  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.8  

>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 312

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 49/123 (39%), Positives = 78/123 (63%), Gaps = 7/123 (5%)
 Frame = +3

Query: 261 KYIDIGANLTDDMYKGVYNGSRKHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELS 440
           ++ DIG N TD +++G+Y+   KH  D D ++ RA   G+ K+++TG ++E+S++A+ L+
Sbjct: 13  RFYDIGYNATDPVFRGIYHEKLKHPDDFDSIISRAKAVGVEKMMITGDNVENSEEALNLA 72

Query: 441 RTDSKLFT-TVGCHPSRA*GSIQ----SDDYLQGLRDLISGNK--DKVVAIGECGLDYER 599
            T+ + FT TVG HP +A   ++     +DYL  L  L +  K   KVVA GE GLDY+R
Sbjct: 73  -TNYECFTSTVGVHPCQAQCFLRHSEGPEDYLVKLEALANKGKASGKVVAFGEFGLDYDR 131

Query: 600 FHF 608
            H+
Sbjct: 132 LHY 134


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -3

Query: 538 RSRSPCR*SSDWIEPHALLG*HPTVVNNLESVLES-SIAFLLSSRLPPVTMILLMPLVQA 362
           +S +P   SS    P + L     VV+ + S L S S A   +S   P + I+  P+   
Sbjct: 479 QSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSV 538

Query: 361 LSSTTS 344
           LSS++S
Sbjct: 539 LSSSSS 544


>SPBC25H2.08c |mrs2||magnesium ion transporter
           Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 457 CSQLWDVIQAEHEVLSNLMTTCKDCEISYQVTRTKLWL 570
           C Q+ +++Q    ++ N+ +T + C I     R  L L
Sbjct: 296 CKQVDEIVQQTDNLVGNIRSTEEICNIMLDANRNSLML 333


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 285 LTDDMYKGVYNGSRKHEPDLD 347
           L  D Y+ +YN    HEPDL+
Sbjct: 27  LRADNYEEIYNSLVHHEPDLE 47


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
 Frame = +3

Query: 219 KLYYHLNEKDEC-LRKYIDIGANLTDDMYKGVYNGSRKHEPDLDVVLERAWTSGINKIIV 395
           K   HL E  E    +Y+D+   +   +   +     + +  +D + E  W S    I  
Sbjct: 21  KFVRHLQESTETDTSRYMDMENYIQKRVQDELKQLQLRQKKAIDAIQEEEWKSNAKTIKD 80

Query: 396 TGGSLEDSKKAIELSRTDSKL 458
           + GSL+ +  + E      KL
Sbjct: 81  SQGSLDSNLLSAEFRSFQEKL 101


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 433 SFLGQILSCSQLWDVI--QAEHEVLSNLMTTC 522
           SF G +++C+ +WD +   + H  L +    C
Sbjct: 356 SFFGSLIACAPMWDFVYSSSRHNTLLDEDINC 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,016
Number of Sequences: 5004
Number of extensions: 43324
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)