Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00788
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0409 + 3143838-3144017,3144345-3144461,3144659-3144739,314...    56   2e-08
07_01_0412 + 3151059-3151090,3151374-3151833,3151899-3151979,315...    44   1e-04
12_02_1013 + 25305531-25305611,25305793-25305861,25306115-253062...    29   3.0  
11_01_0131 + 1086916-1088127,1088213-1089469                           28   6.9  
02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263     28   6.9  
05_03_0558 + 15454552-15454746,15456700-15457134                       27   9.1  
04_01_0174 - 1960817-1960830,1962052-1962108,1962255-1962324,196...    27   9.1  

>07_01_0409 +
           3143838-3144017,3144345-3144461,3144659-3144739,
           3145335-3145405,3145479-3145589,3146194-3146382,
           3146643-3146670
          Length = 258

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 10/86 (11%)
 Frame = +3

Query: 393 VTGGSLEDSKKAIELSRTDSKLFT-TVGCHPSRA*GSI----QSDD---YLQGLRDLISG 548
           VTGGSL++S++A+E++ TD +L      C      G+     +S D   + Q L  L   
Sbjct: 61  VTGGSLKESREALEIAETDGELSCFDAACFDYVLLGAFKEFEESGDPKGHFQALLALAKE 120

Query: 549 N--KDKVVAIGECGLDYERFHFCEKE 620
              K KVVA+GECGLDY+R HFC  +
Sbjct: 121 GIAKGKVVAVGECGLDYDRLHFCPSD 146


>07_01_0412 +
           3151059-3151090,3151374-3151833,3151899-3151979,
           3152682-3152752,3152827-3152937,3153149-3153231,
           3153489-3153705,3154169-3154252,3154423-3154498
          Length = 404

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = +3

Query: 552 KDKVVAIGECGLDYERFHFCEKE 620
           K KVVA+GECGLDY+R HFC  +
Sbjct: 189 KGKVVAVGECGLDYDRLHFCPSD 211



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = +3

Query: 303 KGVYNGSRKHEPDLDVVLERAWTSGINKIIV 395
           +G+Y+G + H  D+  VL RAW +G+++IIV
Sbjct: 11  EGIYHGKQCHAADIPAVLARAWAAGVDRIIV 41



 Score = 32.3 bits (70), Expect = 0.32
 Identities = 17/39 (43%), Positives = 28/39 (71%)
 Frame = +3

Query: 342 LDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKL 458
           L+++L   W SG     VTGGSL++S++A+E++ TD +L
Sbjct: 69  LNLLLSLVW-SGRK---VTGGSLKESREALEIAETDGEL 103


>12_02_1013 +
           25305531-25305611,25305793-25305861,25306115-25306208,
           25306292-25306396,25306577-25306660,25306793-25306866,
           25307936-25308001,25308892-25308948,25309433-25309477,
           25309602-25309655,25310097-25310237
          Length = 289

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/25 (52%), Positives = 21/25 (84%), Gaps = 2/25 (8%)
 Frame = +1

Query: 433 SFLGQILSCSQLWDVIQ--AEHEVL 501
           +F GQ+L+ SQLWD+I+  AE+++L
Sbjct: 85  TFRGQVLNGSQLWDLIEGLAENDLL 109


>11_01_0131 + 1086916-1088127,1088213-1089469
          Length = 822

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 433 SIAFLLSSRLPPVTMILLMPLVQALSSTTSKSGSCFLDPLYTPLYISS 290
           S  F +   LPP  +  L   V ALS+   + G  FL+ L  P+++ S
Sbjct: 126 SFGFAVGCALPPFLVGALTGYV-ALSTDDKRKGDTFLNKLSFPIFLGS 172


>02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263
          Length = 769

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +3

Query: 234 LNEKDECLRKYIDIGANLTDDMYKGVYNGSRKHEPDLDVVLERAWTSGINKIIVTG 401
           L+  D  +R ++D G+N  DD +K +    R   PD    +   +++  N+++V G
Sbjct: 85  LSIADGEVRVFVDAGSNCHDDRFKAISGHYR--TPDYGRSIAYRFSTARNRLVVLG 138


>05_03_0558 + 15454552-15454746,15456700-15457134
          Length = 209

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 303 KGVYNGSRKHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIE 434
           +G+  G+R H P   V  +  W S  +K++   G  E++  A+E
Sbjct: 63  RGMPAGARTHCPKGGVADDPTWISDGDKVVCGHGRAEEASVAVE 106


>04_01_0174 -
           1960817-1960830,1962052-1962108,1962255-1962324,
           1962352-1962501,1964338-1964487,1964751-1964798,
           1964930-1964956,1965243-1965319,1965423-1965525,
           1966399-1966529,1967499-1967676,1968886-1968945
          Length = 354

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 487 EHEVLSNLMTTCKDCE---ISYQVTRTKLWL 570
           E EV S L+ TC  C    +SYQ+  + +WL
Sbjct: 2   EAEVASALVGTCMPCNQFVLSYQIVDSMIWL 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,818,355
Number of Sequences: 37544
Number of extensions: 247230
Number of successful extensions: 604
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)