Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00788
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY303576-1|AAP57298.1|  286|Caenorhabditis elegans cell death-re...    57   1e-08
AF036694-6|AAB88340.1|  286|Caenorhabditis elegans Cell-death-re...    57   1e-08
U80836-6|AAB37894.2|  259|Caenorhabditis elegans Hypothetical pr...    45   5e-05
AL132863-1|CAB60573.1|  477|Caenorhabditis elegans Hypothetical ...    41   6e-04
AL110480-1|CAB60325.2|  437|Caenorhabditis elegans Hypothetical ...    36   0.023
AF000261-7|AAB52927.2|  340|Caenorhabditis elegans Serpentine re...    30   1.2  

>AY303576-1|AAP57298.1|  286|Caenorhabditis elegans cell
           death-related nuclease 2 protein.
          Length = 286

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
 Frame = +3

Query: 255 LRKYIDIGANLTDDMYKGVYNGSRKHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIE 434
           L + +DIGANL          G   ++ DL+ VL+RA  +G++KI+VTG S + S +  +
Sbjct: 3   LYELVDIGANL----------GHPSYQKDLNDVLDRAKQAGLSKIMVTGTSEKISHECAD 52

Query: 435 L-SRTDSKLFTTVGCHPSRA*GSIQSDDYLQGLRDLISGNKDKVVAIGECGLDYER 599
           L  +    L+ T G HP  A     +D  L+ L+ L        VA+GECGLD+ R
Sbjct: 53  LVEKYPGFLYFTAGVHPHDA--KDWNDGTLEALKKL--QENPSCVAVGECGLDFNR 104


>AF036694-6|AAB88340.1|  286|Caenorhabditis elegans
           Cell-death-related nuclease protein2 protein.
          Length = 286

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
 Frame = +3

Query: 255 LRKYIDIGANLTDDMYKGVYNGSRKHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIE 434
           L + +DIGANL          G   ++ DL+ VL+RA  +G++KI+VTG S + S +  +
Sbjct: 3   LYELVDIGANL----------GHPSYQKDLNDVLDRAKQAGLSKIMVTGTSEKISHECAD 52

Query: 435 L-SRTDSKLFTTVGCHPSRA*GSIQSDDYLQGLRDLISGNKDKVVAIGECGLDYER 599
           L  +    L+ T G HP  A     +D  L+ L+ L        VA+GECGLD+ R
Sbjct: 53  LVEKYPGFLYFTAGVHPHDA--KDWNDGTLEALKKL--QENPSCVAVGECGLDFNR 104


>U80836-6|AAB37894.2|  259|Caenorhabditis elegans Hypothetical
           protein B0432.8 protein.
          Length = 259

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = +3

Query: 327 KHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRT-DSKLFTTVGCHPSRA*GSI 503
           K + DLD V+  A  +GI K+I         +K+I +S+     ++T +G HP +  G  
Sbjct: 12  KFKEDLDDVIGHAHATGIQKMINFPEFESQFEKSIGISKKWPGSVYTGIGIHPIQKRGKS 71

Query: 504 QSDDYLQGLRDLISGNKDKVVAIGECGLDY 593
               ++  +      ++  ++ +GECGLD+
Sbjct: 72  AKMKHISKMEQFFVEHERDIICVGECGLDH 101


>AL132863-1|CAB60573.1|  477|Caenorhabditis elegans Hypothetical
           protein Y37H2A.1 protein.
          Length = 477

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 399 GGSLEDSKKAIELSRTDSKLFTTVGCHPSRA*GSIQSDDYLQGLRDLISGNKD-KVVAIG 575
           GG+  D    I    ++  L TT GCHP  A      D + Q L  ++S     KV+A+G
Sbjct: 238 GGNGYDIDWIINEIESNIYLGTTWGCHPHYAQEWASKDIFWQTLEHILSNAATWKVLAVG 297

Query: 576 ECGLDYER 599
           ECGLD  R
Sbjct: 298 ECGLDLHR 305


>AL110480-1|CAB60325.2|  437|Caenorhabditis elegans Hypothetical
           protein Y24F12A.1 protein.
          Length = 437

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +3

Query: 393 VTGGSLEDSKKAIELSRTDSKLFTTVGCHPSRA*GSIQSDDYLQGLRDLISGNKD-KVVA 569
           V G S  D +  ++   +   L TT GCHP  A    +   +   +  ++S  ++ KV+A
Sbjct: 197 VKGNSSYDVEWIVKELASPLYLGTTWGCHPHFAQHWGRMGVFWTTMEYILSDAEEWKVLA 256

Query: 570 IGECGLDYERFHFCEKE 620
           +GECG+D    H CE E
Sbjct: 257 VGECGID---LHRCESE 270


>AF000261-7|AAB52927.2|  340|Caenorhabditis elegans Serpentine
           receptor, class x protein98 protein.
          Length = 340

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 26  SLNIIINLLLTYRVFIN*VVYH*FVALNYIRYILVSNMINLMNNI 160
           S  I++ LL  + +FIN +V H F+A N   + L+ +   + N+I
Sbjct: 55  SAGIVMILLSAFGIFINILVLHRFIAKNMSSFYLLCSSKTVSNSI 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,378,768
Number of Sequences: 27780
Number of extensions: 233693
Number of successful extensions: 677
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)