Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00788
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   5.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 89  H*FVALNYIRYILVSNM-INLMNNI*ETHLNNLSILHIQE 205
           H F+    +R + V+   I  + N     LNNL ILH+++
Sbjct: 812 HVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLED 851



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 243 KDECLRKYIDIGANLTDDMYKGVY 314
           +D  L K +D+G N   + Y G +
Sbjct: 451 RDLALLKTLDLGENRISNFYNGSF 474


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 602 KPLII*STLSYSHNFVLVT*YEISQ 528
           KP    +TL+  HNF  +T  EI+Q
Sbjct: 418 KPFPRRATLAQLHNFTTMTPQEIAQ 442


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 50  LLTYRVFIN*VVYH*FVALNYIRYI 124
           LLT R F++ + +  F +  YIR+I
Sbjct: 301 LLTSRDFLSSLAFRVFQSTQYIRHI 325


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 104 LNYIRYILVSNMINLMNNI*ETHLNNLSILHIQEIKAN 217
           L Y  +  +SN+IN  + + E   N L +L   + K N
Sbjct: 270 LKYNTWEPISNLINCSDILEEFERNRLQLLESFKRKVN 307


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 140 SYCSLICNVYNLKQQINGTQ 81
           S CSL C V   K+ + G Q
Sbjct: 585 SVCSLPCEVGQAKKYVAGEQ 604


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,058
Number of Sequences: 438
Number of extensions: 2891
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)