Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00787
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    27   2.2  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    27   2.9  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   5.1  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    26   6.7  

>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -2

Query: 756 IFSMYPLFLLKMISLWS*ALVFQIFKNY*GIFYELFGYYTFLC 628
           + S  P+++L ++++         FKNY    + LFG++  +C
Sbjct: 78  LISFTPIYVLNVLAICYLKYKDAFFKNYGAAEWTLFGFWCLVC 120


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 684 FKNY*GIFYELFGYYTFLC 628
           FKNY  + + LFG++ F+C
Sbjct: 102 FKNYGAVEWTLFGFWCFVC 120


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = -2

Query: 648 GYYTFLCLKFEISYNL*SYYIMLKLVXFLCLMLWP 544
           G Y+ L  ++++  ++ ++ I  + + FL + LWP
Sbjct: 11  GLYSSLRTRYKVYISMHAFAIWHRFISFLAIYLWP 45


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = -2

Query: 756 IFSMYPLFLLKMISLWS*ALVFQIFKNY*GIFYELFGYYTFLC 628
           + S  P+++L ++++         FK+Y    + LFG++  +C
Sbjct: 78  LISFTPIYVLNVLAICYLTYKDAFFKDYGAAEWTLFGFWCLVC 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,224
Number of Sequences: 5004
Number of extensions: 45136
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)