Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00787
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355     29   5.3  
03_06_0334 + 33208266-33208481,33208789-33208940,33209141-332092...    29   5.3  
01_01_0483 - 3550429-3551184                                           29   5.3  
04_04_1681 + 35322992-35323765                                         28   7.1  

>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
          Length = 1109

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
 Frame = +2

Query: 116 RGGGA---RQGHLPGGRGVAPR 172
           RGGG    R G  PGGRGV PR
Sbjct: 37  RGGGRNGPRGGRFPGGRGVEPR 58


>03_06_0334 +
           33208266-33208481,33208789-33208940,33209141-33209221,
           33209371-33209491
          Length = 189

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 229 PQATMPYWT*RFFS*SMGHTRGDPPSPRQVS 137
           P    PY   RFFS S+  +RG  PSP+Q S
Sbjct: 53  PPPLTPY---RFFSSSVSESRGTSPSPKQES 80


>01_01_0483 - 3550429-3551184
          Length = 251

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 89  LPVALDVHVRGGGARQGHLPGGRGVAPRVPH 181
           L  A+   + GGG R G + GG G+AP  PH
Sbjct: 162 LAAAVSAGMYGGGRRLGVIDGG-GIAPPSPH 191


>04_04_1681 + 35322992-35323765
          Length = 257

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 42  RNTCQSQLRRTRLGRFFQLHSTFMCAGGEPDKDTCRGDGGSPLVC-PIDYEK 194
           R++C S+L +   GR     S   C   + D+  CRG  G+P  C P  Y K
Sbjct: 154 RDSCPSELSKKVNGRTVACRSA--CDVFDTDQYCCRGMYGNPSTCQPTFYSK 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,027,212
Number of Sequences: 37544
Number of extensions: 284093
Number of successful extensions: 816
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)