Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00786
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    28   0.95 
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    27   2.2  
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...    26   3.8  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   6.7  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    25   8.9  

>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 20/43 (46%), Positives = 23/43 (53%)
 Frame = -2

Query: 377 SENLCLLSRQPQSQPALLFLRSIISKFVNAKRSIWILLVQLFI 249
           SE      R  ++Q ALL L  I SKF N   + W LLVQL I
Sbjct: 858 SELSVRFGRDFRAQLALLVLFWISSKFGNIIDASWPLLVQLTI 900


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 124 RHYDLNQAKELFESFVIEHNREYKDDADRELHY 222
           +H +  + K L  S  I+ + + KDD D   HY
Sbjct: 465 KHQNSKKQKSLASSSTIDLSEQPKDDKDARFHY 497


>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -3

Query: 262 FNCLSLPSFS*MIDNAALCRHH---PCIPC 182
           +N ++L  +  ++DN A+CR+H    CI C
Sbjct: 26  WNAVALWQWDIVVDNCAICRNHIMDLCIEC 55


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 329 LLFLRSIISKFVNAKRSIWILLVQLFISAKFF 234
           +L  R  +SKFV A  ++W +++ L  +A  F
Sbjct: 146 MLLQRFPVSKFVAASTALWTIIIFLHCAAYNF 177


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 380 KSENLCLLSRQP-QSQPALLFLRSIISKFVNAK 285
           +SE++ LL R+    +  LL+LR +ISK + +K
Sbjct: 384 RSESVELLKRESFLLKKVLLYLRDVISKLLKSK 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,952,965
Number of Sequences: 5004
Number of extensions: 36997
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)