Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00785
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   100   9e-22
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...    91   5e-19
Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    29   2.4  
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    29   2.4  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    29   2.4  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    29   2.4  
AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin recep...    29   3.2  
AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal daue...    29   3.2  
Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   4.2  
Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z49913-1|CAA90142.1|  340|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr...    27   9.8  
L09634-1|AAA27967.1|  776|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  100 bits (240), Expect = 9e-22
 Identities = 44/53 (83%), Positives = 47/53 (88%)
 Frame = +2

Query: 101 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHVK 259
           +D HF TGDSGA+ATFP QCSALRKN  VM+KGRPCKIVEMSTSKTGKHGH K
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAK 59



 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 48/87 (55%), Positives = 61/87 (70%), Gaps = 3/87 (3%)
 Frame = +1

Query: 256 KVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDL 432
           KVH+V IDIF  KK EDICPSTHNMDVP VKR +Y L  I DDGY +LM  ++ + ++DL
Sbjct: 59  KVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDL 117

Query: 433 KIPDGDLGTQLRTDF--DSGKELLCTV 507
           K+PD +LG Q+R  +  D G  L+  V
Sbjct: 118 KLPDTELGQQIRDAYEKDEGSVLVQVV 144


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 47/87 (54%), Positives = 62/87 (71%), Gaps = 3/87 (3%)
 Frame = +1

Query: 256 KVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDL 432
           KVH+V IDIF  KK EDICPSTHNMDVP VKR +Y L  I +DG+ +LM  ++ +L++DL
Sbjct: 93  KVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDL 151

Query: 433 KIPDGDLGTQLR--TDFDSGKELLCTV 507
           K+P+GDLG  +R   + D G  L+  V
Sbjct: 152 KMPEGDLGNTIREALEKDEGSVLVQVV 178



 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 38/53 (71%), Positives = 46/53 (86%)
 Frame = +2

Query: 101 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHVK 259
           ++  F++ +SGA+ATFP QCSALRKN  VM++GRPCKIVEMSTSKTGKHGH K
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAK 93


>Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical
           protein F38B7.4 protein.
          Length = 325

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -2

Query: 697 STTLYYYSFFKLNLYTILCFTFM*ELLIVKN*KFVNPINAELVYLSRAVFALTAMTHSSP 518
           S T Y+ SF+    +T  C TF+ + L   +   +   N  L +L + +F   A    S 
Sbjct: 253 SFTFYFNSFYDYRFWTFFCGTFVWQSLHSLDGFIMIMFNERLSFLKKQLFQPLA----SK 308

Query: 517 QDFARCTTIPCRCRS 473
             F R + +P R  S
Sbjct: 309 VSFVRVSQVPSRVHS 323


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +3

Query: 66  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 182
           V+K  T + ++S T      T    TPGP P +PC+  P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +3

Query: 66  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 182
           V+K  T + ++S T      T    TPGP P +PC+  P V T+
Sbjct: 13  VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 56


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +3

Query: 66  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 182
           V+K  T + ++S T      T    TPGP P +PC+  P V T+
Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 210


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +3

Query: 66  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 182
           V+K  T + ++S T      T    TPGP P +PC+  P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin receptor
           homolog protein.
          Length = 1846

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 309 DIFILFTIEDINPNQVNFTWPCFPVLDVD 223
           D+ I  +I  +N + V F+WP F + D+D
Sbjct: 648 DMAINVSITAVNADSVFFSWPSFNITDID 676


>AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal dauer
           formation protein 2 protein.
          Length = 1843

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 309 DIFILFTIEDINPNQVNFTWPCFPVLDVD 223
           D+ I  +I  +N + V F+WP F + D+D
Sbjct: 645 DMAINVSITAVNADSVFFSWPSFNITDID 673


>Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical
           protein F32D8.2 protein.
          Length = 568

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +1

Query: 280 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 435
           IF   + ED+   T +    H+ R + ++       D+S DGYLTL + N  DL  D++
Sbjct: 74  IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 96  TSKTHTLRPETPGPQPPSPCNVRP 167
           T K  T R E+P P PP P   RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381


>Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A8.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 385 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 501
           GYL      GD ++++K+ +G    Q+ +D D  K   C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 183 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 91
           +P  +R+++C G + E  E  ++KC  +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375


>Z49913-1|CAA90142.1|  340|Caenorhabditis elegans Hypothetical
           protein ZK938.2 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 580 AELVYLSRAVFALTAMTHSSPQDFARCTTIPCRCRSQ 470
           +E  Y    V     +T+ +P D ARC TI CR +S+
Sbjct: 16  SEPYYPGDTVKGTVVLTNKTPLD-ARCVTIKCRGKSE 51


>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical protein
            C08B11.3 protein.
          Length = 1244

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 481  SGKELLCTVRNPAVRSASSPSKQTQLSTNKPTQHL*G*QTFNFLQSTTLT 630
            S  +L     +P    AS+P K++   +NKPT H+     F+ L   T T
Sbjct: 1156 SSSQLPTVPDSPTSSVASAPMKESTSVSNKPTVHINRMLNFSSLNEKTPT 1205


>L09634-1|AAA27967.1|  776|Caenorhabditis elegans Hypothetical
           protein C30C11.4 protein.
          Length = 776

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = -1

Query: 530 ALLTAGFRTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIR 396
           ALLT   RT+  + L   K V +CV   PS      RR+ LSAI+
Sbjct: 120 ALLTK-LRTIVESQLSDVKKVSDCVLAVPSYFTDVQRRAVLSAIQ 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,925,211
Number of Sequences: 27780
Number of extensions: 383681
Number of successful extensions: 1162
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)