Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00784X
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    36   0.003
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    26   3.5  
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    26   4.7  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    25   6.2  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +1

Query: 1   GYARNPSLKQQLFSYAILGFALSE 72
           G +RNPS++  LFS AILGFAL+E
Sbjct: 34  GTSRNPSVRPHLFSMAILGFALTE 57


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 462 SFFYIVIEFCNVRALMLNMILIITVYKVRNRNNCSINIM-FTYNILLQIFVYT 307
           +FF + +  C +    +N  ++  +   RN  +CS+N   F + I+    VY+
Sbjct: 83  AFFSMCLRSCTIIYFSMNPYMLCEILNARNVISCSLNTQKFFFIIVAASNVYS 135


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 258 HNQSLHHYEGEVSKHSIPWLSTPD 187
           +++ +  Y G VS H + W++ PD
Sbjct: 180 NSELIQQYAGSVSCHVLDWMNPPD 203


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 145 HYYCHPTYEVSVYTIWSGQPWNRMFGNLTLIVMQGLIVLHLQ 270
           ++Y  P Y+V +  +   +P +R  GN    +M+G+  + LQ
Sbjct: 155 YFYLCPEYKVRIDGVV--KPRSRFLGNSAASIMEGIASIKLQ 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,858
Number of Sequences: 5004
Number of extensions: 45058
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)