Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00784X
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1056 + 23991894-23992028,23992139-23992258,23993366-239934...    31   0.90 
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539...    28   4.8  
09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004     28   4.8  
05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127     28   4.8  
02_01_0375 + 2712289-2712957                                           27   8.4  

>08_02_1056 +
           23991894-23992028,23992139-23992258,23993366-23993434,
           23993568-23993648
          Length = 134

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 284 PVDAHCRCNTISPCITMRVRFPNIRFH 204
           P   + +C   SPC+ ++V F ++RFH
Sbjct: 68  PPSCYSKCYGCSPCVAVQVSFVHLRFH 94


>11_01_0662 -
           5389746-5390548,5390727-5391368,5391624-5391659,
           5392314-5392377
          Length = 514

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 132 NSLESEEQQERHHKTEQTHSLRQ 64
           NS+   E QE+ H  E+TH LRQ
Sbjct: 62  NSIFYSESQEQKHVKEETHRLRQ 84


>09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004
          Length = 258

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 64  RRNPEWRMRTTAA*GRGSWHS 2
           RR  +WR R T + GR  WH+
Sbjct: 153 RRRQQWRRRRTRSCGRTGWHN 173


>05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127
          Length = 649

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 202 PWNRMFGNLTLIVMQGLIVLHLQCASTGM 288
           PW  +FG L+ IV+  LI++ +    TG+
Sbjct: 611 PWQNIFGILSSIVIYALIIIPVSQMDTGL 639


>02_01_0375 + 2712289-2712957
          Length = 222

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 189 LEWTAMESNVWKPHPHSDARTDCVTPTVRVNRNAIYLI 302
           L W     N W P P SD   D     V+ +++A+ L+
Sbjct: 174 LVWWKQSGNNWWPRPDSDLGEDFEYINVKTSQDAVKLV 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,727,485
Number of Sequences: 37544
Number of extensions: 266095
Number of successful extensions: 557
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)