Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00784X
(587 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 52 2e-07
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 52 2e-07
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 52 2e-07
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 29 1.9
U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical pr... 28 4.3
U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z81589-1|CAB04717.1| 272|Caenorhabditis elegans Hypothetical pr... 27 7.5
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 27 9.9
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 27 9.9
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 27 9.9
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 1 GYARNPSLKQQLFSYAILGFALSE 72
GYARNPSLKQQLFSYAILGFALSE
Sbjct: 52 GYARNPSLKQQLFSYAILGFALSE 75
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 1 GYARNPSLKQQLFSYAILGFALSE 72
GYARNPSLKQQLFSYAILGFALSE
Sbjct: 52 GYARNPSLKQQLFSYAILGFALSE 75
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 1 GYARNPSLKQQLFSYAILGFALSE 72
GYARNPSLKQQLFSYAILGFALSE
Sbjct: 76 GYARNPSLKQQLFSYAILGFALSE 99
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 160 PTYEVSVYTIWSGQPWNRMFGNLTLIVMQGLIV 258
P + VSVY I PWN +F ++V Q I+
Sbjct: 29 PLFLVSVYCILKKSPWNMVFYKWLILVFQLAII 61
>U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical
protein T13C2.3a protein.
Length = 431
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = -2
Query: 559 KNVQYRCRHSRTDNSHNKPDVNTHAKYTRLTGFIFLYC 446
K+ + +HS ++ +P +TH Y L + YC
Sbjct: 220 KSKTFNTKHSLDEDEEEEPHQSTHCVYRHLNNEFYRYC 257
>U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical
protein T13C2.3b protein.
Length = 506
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = -2
Query: 559 KNVQYRCRHSRTDNSHNKPDVNTHAKYTRLTGFIFLYC 446
K+ + +HS ++ +P +TH Y L + YC
Sbjct: 295 KSKTFNTKHSLDEDEEEEPHQSTHCVYRHLNNEFYRYC 332
>Z81589-1|CAB04717.1| 272|Caenorhabditis elegans Hypothetical
protein T08G5.1 protein.
Length = 272
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -2
Query: 565 RPKNVQYRCR-HSRTDNSHNKPDVNTHAKYTRLTGFIFLYCH 443
+P+N+ YR R HSR H P T T G F CH
Sbjct: 163 KPRNIAYRPRHHSRKIRVHQDPRYPTIPPPTINYGLKFRRCH 204
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 171 GFSVYYLEWTAMESNVWKPHPHSDARTDCVTPTVRVNRNAIY 296
G+ V+Y E ++ + WK H H D T +R+N Y
Sbjct: 549 GYDVFYTEDPSLPRDQWKVH-HIDDPNARTTTVLRLNEKTPY 589
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 171 GFSVYYLEWTAMESNVWKPHPHSDARTDCVTPTVRVNRNAIY 296
G+ V+Y E ++ + WK H H D T +R+N Y
Sbjct: 612 GYDVFYTEDPSLPRDQWKVH-HIDDPNARTTTVLRLNEKTPY 652
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 171 GFSVYYLEWTAMESNVWKPHPHSDARTDCVTPTVRVNRNAIY 296
G+ V+Y E ++ + WK H H D T +R+N Y
Sbjct: 612 GYDVFYTEDPSLPRDQWKVH-HIDDPNARTTTVLRLNEKTPY 652
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,284,212
Number of Sequences: 27780
Number of extensions: 260769
Number of successful extensions: 647
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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