Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00783
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    26   4.7  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.2  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.2  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   8.2  

>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 39  GESDPRNPTASSC*KTRCGESQRGKEAKSKTPKAGQGGGSR*S*KVQTG 185
           GES+  N T++S  K R     + K+AK +T K+G    +  S K+  G
Sbjct: 297 GESNKDNNTSTSKHKKRPKRLSKFKQAKLETKKSGNKDHATSSEKLSLG 345


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 515 PRNLPTYACYNDLSN*YTIFF*IKVIKLS*LGVNYVLN 402
           P+NLP + CY    N   + + +K I+LS L  +Y+++
Sbjct: 520 PKNLPRFFCYCLKKN--KLSYALKYIRLSGLQFDYIVD 555


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 364 SSGLMSYTRFKTSLMTASFCVWTILFISSILTLVSASSWPQHL 236
           SSGL+     K     +S   + +L I S LTLV  SS+  H+
Sbjct: 732 SSGLLELIALKIGNAVSSLNTFRVLLIFSALTLV-VSSFISHI 773


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 42   ESDPRNPTASSC*KTRCGESQRGKEAKSKTPKAGQGGG 155
            E+DP+NP A S      G +   +++K++ PK     G
Sbjct: 1284 ENDPKNPKAGS---QGSGNTSASEDSKTEKPKTRTNNG 1318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,639
Number of Sequences: 5004
Number of extensions: 46456
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)