Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00783
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    29   4.9  
08_02_1039 - 23866743-23866862,23866985-23867266,23867868-238679...    28   6.5  
04_04_1589 - 34636563-34636856,34636982-34637159,34637349-346374...    28   8.6  

>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 181 VCTFQLHLEPPPWPALGVLLFASL 110
           V  FQ  + PPPWPA G   F  +
Sbjct: 231 VAAFQSRMMPPPWPARGKAEFGDV 254


>08_02_1039 -
           23866743-23866862,23866985-23867266,23867868-23867966,
           23868595-23868903
          Length = 269

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -1

Query: 721 IHHTTSSNIQVDYISYFFSYLNFKLS*RILNTWNGTELISHTINYLAK 578
           + HTTS      Y   F S+ + + +   ++T+NGT+L+  +IN + K
Sbjct: 197 VFHTTSPRRSAGY--GFVSFSSKEAAEAAISTFNGTKLMGRSINVMFK 242


>04_04_1589 -
           34636563-34636856,34636982-34637159,34637349-34637461,
           34637713-34638316,34638401-34638581,34638674-34638816,
           34638972-34639141,34639221-34639307,34639414-34639639,
           34639825-34639964
          Length = 711

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 174 VQTGA*KAVQRI*SQAHGYQGRCCGQDDAETKVKIEEMNKMVQTQKE 314
           VQTG   +VQ    ++ GY GR         +VK+E+++  V   KE
Sbjct: 472 VQTGGTSSVQMALERSVGYSGRVEAARATLDQVKVEDIDTNVAVLKE 518


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,164,826
Number of Sequences: 37544
Number of extensions: 291366
Number of successful extensions: 684
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)