Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00783
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpa...    46   2e-05
AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    28   7.7  

>U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpase
           protein 10 protein.
          Length = 126

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 27/73 (36%), Positives = 36/73 (49%)
 Frame = +1

Query: 37  MASQTQGIQQLLAAEKRAAEKVSXXXXXXXXXXXXXXXXXXDEVXXXXXXXXXXXXXXXA 216
           MASQTQGIQQLLAAEKRAAEK++                   EV                
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKINEARKRKLQRTKQAKQEAQAEVEKYKQQREAEFKAFEQ 60

Query: 217 KHMGTREGVAAKM 255
           +++GT+E + +K+
Sbjct: 61  QYLGTKEDIESKI 73



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 20/41 (48%), Positives = 26/41 (63%)
 Frame = +3

Query: 261 ETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 383
           +T+ +I  M + V   K+AVI  +L LV DIKPELH N  L
Sbjct: 76  DTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTL 116


>AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical
           protein ZK355.4 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 628 TWNGTELISHTINYLAKKLHFDISFSAPCCVFF*LSRLQETC 503
           TW+  ELIS   NY  K +  +I   A  C+F+ L +L   C
Sbjct: 324 TWDRVELISLPANYCTKDVG-NIRDWARVCIFYTLEKLPTNC 364


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
           protein protein 6 protein.
          Length = 1106

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +3

Query: 96  ESQRGKEAKSKTPKAGQGGGSR*S*KVQTGA*KAVQRI*SQAHGYQGRCCGQDDAETKVK 275
           ES+R K A S  P   +      S        +A+ ++  QA  + G   G   + +K  
Sbjct: 708 ESERPKVAPSSQPNPWEKLAKSTSAAASNSLFEALSKV--QADNFSGG--GSTPSYSKSY 763

Query: 276 IEEMNKMVQTQKEAV 320
           +EEMN+++ T+K  V
Sbjct: 764 LEEMNRVMSTRKRVV 778


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,160,360
Number of Sequences: 27780
Number of extensions: 258735
Number of successful extensions: 635
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)