Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00782
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    40   3e-04
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    28   1.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   4.5  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    26   4.5  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.9  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   7.9  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   7.9  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
 Frame = +1

Query: 274 CPQRDPYYPDR--------FIGHEDCLCLNVFAPKMPGDERGCPVVFFVHGGNYKSGSAS 429
           CPQ  P+Y +R        F   EDCL LN++ P       G PV++F+HGG  + G+  
Sbjct: 59  CPQ--PFYNNRKNQVRNPDFKYDEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPL 116

Query: 430 AY---GGQHLTQKDT----ILVTAQYRLGSLGYL 510
            Y     Q L    +    ILV+  +RL   G+L
Sbjct: 117 HYRQCDPQDLQADGSPAKFILVSPGHRLNLFGFL 150



 Score = 33.5 bits (73), Expect = 0.030
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = +2

Query: 161 YTFFGIRYAEPPLGPRRFQRPV 226
           + F GIRYA+PP+G  R++RPV
Sbjct: 19  HRFTGIRYAKPPVGKLRWRRPV 40


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 384 YWATSFIARHFGSEYIETQTIFVTNKSVGIVRVSLRT 274
           YW T F+    G ++I+ Q +F+T     I+  S  T
Sbjct: 396 YWFTVFLVEKLGRKWIQLQGLFITGLMFAILAGSWDT 432


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 617  SCCNGPRFGWERCITFSNVSGRTYR 691
            +C N PRF +E C T  N S +  R
Sbjct: 1482 TCNNDPRFAYEICKTLDNDSDKFVR 1506


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = +1

Query: 340 VFAPKMPGDERGCPVVFFVHGGNYKSG---SASAYGGQHLTQKDTILVTAQYRL 492
           +F P     E G P   + HGG +  G   + +++      Q   ++V   YRL
Sbjct: 88  IFRPHGTAPEGGWPCFLWFHGGGWVLGNINTENSFATHMCEQAKCVVVNVDYRL 141


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/23 (30%), Positives = 18/23 (78%)
 Frame = -2

Query: 626 YNNSSWITTKKRYIVLNPGHYSM 558
           +N + WI++++R+ +++PG  S+
Sbjct: 56  FNGTEWISSRERFSLVSPGWASI 78


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 360 RHFGSEYIETQTIFVTNKSV 301
           RHFG++Y++  T + TNK V
Sbjct: 442 RHFGAQYVDCDTDY-TNKGV 460


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 687 YVLPLTLLKVMQRSHPNLGPLQQLELDHHQKTLYSLESR 571
           Y++P  L   ++R HPNL    QL +  H  +L ++++R
Sbjct: 67  YLMPSPLTDDLKRRHPNL----QLSVVSHISSLLNIKNR 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,903
Number of Sequences: 5004
Number of extensions: 59841
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)