Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00781
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    27   2.9  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.1  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   6.7  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    25   8.9  

>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 330 HSSVVPRDSSRF-SPERGSGVSPTGQGARPRRRQ 428
           HSS  P  S R  SP+R S  S  G G R RR +
Sbjct: 310 HSSNYPSSSRRKPSPDRYSNYSSRGSGGRYRRNR 343


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 453 LPPTSGEAPDAGGGALPGRWETRHSHVRG*IYWSLEEQQSYVVE 322
           LPP    + D     L  +W+T++  +   I+W +++Q S  +E
Sbjct: 181 LPPDKFHS-DQSKALLEPKWKTKNYLISHLIFWIIDQQSSSSIE 223


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 464 PNLSF-PQPVAKHLTPAGARSLAGGRHATPTFGAESTGVS 348
           P +SF P   +++LTP  ++SLA       +F + S   S
Sbjct: 189 PTVSFSPASTSENLTPTSSKSLASNTSLVQSFNSASRSSS 228


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 509 GRGPEHLPEPVEEDAA-GAVLPVALDVHVRGGGA 607
           G+  E   +  +E A  GAV+   LD H +GGGA
Sbjct: 226 GQAAESQSKAFKETADFGAVIITKLDGHAKGGGA 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,867
Number of Sequences: 5004
Number of extensions: 62013
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)